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ZSCAN21 (zinc finger and SCAN domain containing 21)

Identity

Alias_namesZNF38
zinc finger protein 38 (KOX 25)
zinc finger protein 38
Alias_symbol (synonym)DKFZp434L134
NY-REN-21
Zipro1
Other alias
HGNC (Hugo) ZSCAN21
LocusID (NCBI) 7589
Atlas_Id 76494
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99647417 and ends at 99662663 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN21   13104
Cards
Entrez_Gene (NCBI)ZSCAN21  7589  zinc finger and SCAN domain containing 21
AliasesNY-REN-21; ZNF38; Zipro1
GeneCards (Weizmann)ZSCAN21
Ensembl hg19 (Hinxton)ENSG00000166529 [Gene_View]  chr7:99647417-99662663 [Contig_View]  ZSCAN21 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166529 [Gene_View]  chr7:99647417-99662663 [Contig_View]  ZSCAN21 [Vega]
ICGC DataPortalENSG00000166529
TCGA cBioPortalZSCAN21
AceView (NCBI)ZSCAN21
Genatlas (Paris)ZSCAN21
WikiGenes7589
SOURCE (Princeton)ZSCAN21
Genetics Home Reference (NIH)ZSCAN21
Genomic and cartography
GoldenPath hg19 (UCSC)ZSCAN21  -     chr7:99647417-99662663 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZSCAN21  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblZSCAN21 - 7q22.1 [CytoView hg19]  ZSCAN21 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN21 [Mapview hg19]  ZSCAN21 [Mapview hg38]
OMIM601261   
Gene and transcription
Genbank (Entrez)AF155100 AK075324 AK292267 AK301871 AK313884
RefSeq transcript (Entrez)NM_145914
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ZSCAN21
Cluster EST : UnigeneHs.632294 [ NCBI ]
CGAP (NCI)Hs.632294
Alternative Splicing GalleryENSG00000166529
Gene ExpressionZSCAN21 [ NCBI-GEO ]   ZSCAN21 [ EBI - ARRAY_EXPRESS ]   ZSCAN21 [ SEEK ]   ZSCAN21 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7589
GTEX Portal (Tissue expression)ZSCAN21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5A6
Splice isoforms : SwissVarQ9Y5A6
PhosPhoSitePlusQ9Y5A6
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN21
DMDM Disease mutations7589
Blocks (Seattle)ZSCAN21
SuperfamilyQ9Y5A6
Human Protein AtlasENSG00000166529
Peptide AtlasQ9Y5A6
HPRD03162
IPIIPI00001344   IPI00743996   IPI00902468   IPI00926631   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5A6
IntAct (EBI)Q9Y5A6
FunCoupENSG00000166529
BioGRIDZSCAN21
STRING (EMBL)ZSCAN21
ZODIACZSCAN21
Ontologies - Pathways
QuickGOQ9Y5A6
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  protein binding  nucleus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  protein binding  nucleus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZSCAN21
Atlas of Cancer Signalling NetworkZSCAN21
Wikipedia pathwaysZSCAN21
Orthology - Evolution
OrthoDB7589
GeneTree (enSembl)ENSG00000166529
Phylogenetic Trees/Animal Genes : TreeFamZSCAN21
HOVERGENQ9Y5A6
HOGENOMQ9Y5A6
Homologs : HomoloGeneZSCAN21
Homology/Alignments : Family Browser (UCSC)ZSCAN21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN21
dbVarZSCAN21
ClinVarZSCAN21
1000_GenomesZSCAN21 
Exome Variant ServerZSCAN21
ExAC (Exome Aggregation Consortium)ZSCAN21 (select the gene name)
Genetic variants : HAPMAP7589
Genomic Variants (DGV)ZSCAN21 [DGVbeta]
DECIPHER (Syndromes)7:99647417-99662663  ENSG00000166529
CONAN: Copy Number AnalysisZSCAN21 
Mutations
ICGC Data PortalZSCAN21 
TCGA Data PortalZSCAN21 
Broad Tumor PortalZSCAN21
OASIS PortalZSCAN21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN21
DgiDB (Drug Gene Interaction Database)ZSCAN21
DoCM (Curated mutations)ZSCAN21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN21 (select a term)
intoGenZSCAN21
Cancer3DZSCAN21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601261   
Orphanet
MedgenZSCAN21
Genetic Testing Registry ZSCAN21
NextProtQ9Y5A6 [Medical]
TSGene7589
GENETestsZSCAN21
Huge Navigator ZSCAN21 [HugePedia]
snp3D : Map Gene to Disease7589
BioCentury BCIQZSCAN21
ClinGenZSCAN21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7589
Chemical/Pharm GKB GenePA162410981
Clinical trialZSCAN21
Miscellaneous
canSAR (ICR)ZSCAN21 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN21
EVEXZSCAN21
GoPubMedZSCAN21
iHOPZSCAN21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:54:13 CET 2017

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