Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZSCAN22 (zinc finger and SCAN domain containing 22)

Identity

Alias_namesZNF50
HKR2
zinc finger protein 50
GLI-Kruppel family member HKR2
Other alias
HGNC (Hugo) ZSCAN22
LocusID (NCBI) 342945
Atlas_Id 40829
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58327019 and ends at 58342346 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN22   4929
Cards
Entrez_Gene (NCBI)ZSCAN22  342945  zinc finger and SCAN domain containing 22
AliasesHKR2; ZNF50
GeneCards (Weizmann)ZSCAN22
Ensembl hg19 (Hinxton)ENSG00000182318 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182318 [Gene_View]  chr19:58327019-58342346 [Contig_View]  ZSCAN22 [Vega]
ICGC DataPortalENSG00000182318
TCGA cBioPortalZSCAN22
AceView (NCBI)ZSCAN22
Genatlas (Paris)ZSCAN22
WikiGenes342945
SOURCE (Princeton)ZSCAN22
Genetics Home Reference (NIH)ZSCAN22
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN22  -     chr19:58327019-58342346 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN22  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZSCAN22 - 19q13.43 [CytoView hg19]  ZSCAN22 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZSCAN22 [Mapview hg19]  ZSCAN22 [Mapview hg38]
OMIM165260   
Gene and transcription
Genbank (Entrez)AK128716 BC101630 BC112277 BC143446 BM669173
RefSeq transcript (Entrez)NM_001321116 NM_001321117 NM_181846
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN22
Cluster EST : UnigeneHs.388162 [ NCBI ]
CGAP (NCI)Hs.388162
Alternative Splicing GalleryENSG00000182318
Gene ExpressionZSCAN22 [ NCBI-GEO ]   ZSCAN22 [ EBI - ARRAY_EXPRESS ]   ZSCAN22 [ SEEK ]   ZSCAN22 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342945
GTEX Portal (Tissue expression)ZSCAN22
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10073   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP10073  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10073
Splice isoforms : SwissVarP10073
PhosPhoSitePlusP10073
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN22
DMDM Disease mutations342945
Blocks (Seattle)ZSCAN22
SuperfamilyP10073
Human Protein AtlasENSG00000182318
Peptide AtlasP10073
HPRD01315
IPIIPI00302884   
Protein Interaction databases
DIP (DOE-UCLA)P10073
IntAct (EBI)P10073
FunCoupENSG00000182318
BioGRIDZSCAN22
STRING (EMBL)ZSCAN22
ZODIACZSCAN22
Ontologies - Pathways
QuickGOP10073
Ontology : AmiGOmolecular_function  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZSCAN22
Atlas of Cancer Signalling NetworkZSCAN22
Wikipedia pathwaysZSCAN22
Orthology - Evolution
OrthoDB342945
GeneTree (enSembl)ENSG00000182318
Phylogenetic Trees/Animal Genes : TreeFamZSCAN22
HOVERGENP10073
HOGENOMP10073
Homologs : HomoloGeneZSCAN22
Homology/Alignments : Family Browser (UCSC)ZSCAN22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN22
dbVarZSCAN22
ClinVarZSCAN22
1000_GenomesZSCAN22 
Exome Variant ServerZSCAN22
ExAC (Exome Aggregation Consortium)ZSCAN22 (select the gene name)
Genetic variants : HAPMAP342945
Genomic Variants (DGV)ZSCAN22 [DGVbeta]
DECIPHERZSCAN22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN22 
Mutations
ICGC Data PortalZSCAN22 
TCGA Data PortalZSCAN22 
Broad Tumor PortalZSCAN22
OASIS PortalZSCAN22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN22
DgiDB (Drug Gene Interaction Database)ZSCAN22
DoCM (Curated mutations)ZSCAN22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN22 (select a term)
intoGenZSCAN22
Cancer3DZSCAN22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM165260   
Orphanet
MedgenZSCAN22
Genetic Testing Registry ZSCAN22
NextProtP10073 [Medical]
TSGene342945
GENETestsZSCAN22
Target ValidationZSCAN22
Huge Navigator ZSCAN22 [HugePedia]
snp3D : Map Gene to Disease342945
BioCentury BCIQZSCAN22
ClinGenZSCAN22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342945
Chemical/Pharm GKB GenePA29307
Clinical trialZSCAN22
Miscellaneous
canSAR (ICR)ZSCAN22 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN22
EVEXZSCAN22
GoPubMedZSCAN22
iHOPZSCAN22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:04:01 CEST 2017

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