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ZSCAN23 (zinc finger and SCAN domain containing 23)

Identity

Alias_namesZNF453
ZNF390
zinc finger protein 453
zinc finger protein 390
Alias_symbol (synonym)dJ29K1.3.1
Other aliasdJ29K1.3
HGNC (Hugo) ZSCAN23
LocusID (NCBI) 222696
Atlas_Id 76495
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28432655 and ends at 28443502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZSCAN23 (6p22.1) / SV2B (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN23   21193
Cards
Entrez_Gene (NCBI)ZSCAN23  222696  zinc finger and SCAN domain containing 23
AliasesZNF390; ZNF453; dJ29K1.3; dJ29K1.3.1
GeneCards (Weizmann)ZSCAN23
Ensembl hg19 (Hinxton)ENSG00000187987 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187987 [Gene_View]  ENSG00000187987 [Sequence]  chr6:28432655-28443502 [Contig_View]  ZSCAN23 [Vega]
ICGC DataPortalENSG00000187987
TCGA cBioPortalZSCAN23
AceView (NCBI)ZSCAN23
Genatlas (Paris)ZSCAN23
WikiGenes222696
SOURCE (Princeton)ZSCAN23
Genetics Home Reference (NIH)ZSCAN23
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN23  -     chr6:28432655-28443502 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN23  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN23 - 6p22.1 [CytoView hg19]  ZSCAN23 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN23 [Mapview hg19]  ZSCAN23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092117 AK309235 AL833347 BC101557 BC101559
RefSeq transcript (Entrez)NM_001012455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN23
Cluster EST : UnigeneHs.721841 [ NCBI ]
CGAP (NCI)Hs.721841
Alternative Splicing GalleryENSG00000187987
Gene ExpressionZSCAN23 [ NCBI-GEO ]   ZSCAN23 [ EBI - ARRAY_EXPRESS ]   ZSCAN23 [ SEEK ]   ZSCAN23 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222696
GTEX Portal (Tissue expression)ZSCAN23
Human Protein AtlasENSG00000187987-ZSCAN23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MJ62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MJ62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MJ62
Splice isoforms : SwissVarQ3MJ62
PhosPhoSitePlusQ3MJ62
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN23
DMDM Disease mutations222696
Blocks (Seattle)ZSCAN23
SuperfamilyQ3MJ62
Human Protein Atlas [tissue]ENSG00000187987-ZSCAN23 [tissue]
Peptide AtlasQ3MJ62
IPIIPI00896470   IPI00794109   IPI00984303   
Protein Interaction databases
DIP (DOE-UCLA)Q3MJ62
IntAct (EBI)Q3MJ62
FunCoupENSG00000187987
BioGRIDZSCAN23
STRING (EMBL)ZSCAN23
ZODIACZSCAN23
Ontologies - Pathways
QuickGOQ3MJ62
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  extracellular exosome  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  extracellular exosome  
NDEx NetworkZSCAN23
Atlas of Cancer Signalling NetworkZSCAN23
Wikipedia pathwaysZSCAN23
Orthology - Evolution
OrthoDB222696
GeneTree (enSembl)ENSG00000187987
Phylogenetic Trees/Animal Genes : TreeFamZSCAN23
HOVERGENQ3MJ62
HOGENOMQ3MJ62
Homologs : HomoloGeneZSCAN23
Homology/Alignments : Family Browser (UCSC)ZSCAN23
Gene fusions - Rearrangements
Fusion : QuiverZSCAN23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN23
dbVarZSCAN23
ClinVarZSCAN23
1000_GenomesZSCAN23 
Exome Variant ServerZSCAN23
ExAC (Exome Aggregation Consortium)ENSG00000187987
GNOMAD BrowserENSG00000187987
Varsome BrowserZSCAN23
Genetic variants : HAPMAP222696
Genomic Variants (DGV)ZSCAN23 [DGVbeta]
DECIPHERZSCAN23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN23 
Mutations
ICGC Data PortalZSCAN23 
TCGA Data PortalZSCAN23 
Broad Tumor PortalZSCAN23
OASIS PortalZSCAN23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN23
DgiDB (Drug Gene Interaction Database)ZSCAN23
DoCM (Curated mutations)ZSCAN23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN23 (select a term)
intoGenZSCAN23
Cancer3DZSCAN23(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSCAN23
MedgenZSCAN23
Genetic Testing Registry ZSCAN23
NextProtQ3MJ62 [Medical]
TSGene222696
GENETestsZSCAN23
Target ValidationZSCAN23
Huge Navigator ZSCAN23 [HugePedia]
snp3D : Map Gene to Disease222696
BioCentury BCIQZSCAN23
ClinGenZSCAN23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222696
Chemical/Pharm GKB GenePA162410995
Clinical trialZSCAN23
Miscellaneous
canSAR (ICR)ZSCAN23 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN23
EVEXZSCAN23
GoPubMedZSCAN23
iHOPZSCAN23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:41:01 CEST 2018

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