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ZSCAN25 (zinc finger and SCAN domain containing 25)

Identity

Alias_namesZNF498
zinc finger protein 498
Alias_symbol (synonym)FLJ32468
Other alias
HGNC (Hugo) ZSCAN25
LocusID (NCBI) 221785
Atlas_Id 76496
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99616948 and ends at 99632407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZSCAN25 (7q22.1) / CUX1 (7q22.1)ZSCAN25 (7q22.1) / TPST1 (7q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN25   21961
Cards
Entrez_Gene (NCBI)ZSCAN25  221785  zinc finger and SCAN domain containing 25
AliasesZNF498
GeneCards (Weizmann)ZSCAN25
Ensembl hg19 (Hinxton)ENSG00000197037 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197037 [Gene_View]  chr7:99616948-99632407 [Contig_View]  ZSCAN25 [Vega]
ICGC DataPortalENSG00000197037
TCGA cBioPortalZSCAN25
AceView (NCBI)ZSCAN25
Genatlas (Paris)ZSCAN25
WikiGenes221785
SOURCE (Princeton)ZSCAN25
Genetics Home Reference (NIH)ZSCAN25
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN25  -     chr7:99616948-99632407 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN25  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN25 - 7q22.1 [CytoView hg19]  ZSCAN25 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN25 [Mapview hg19]  ZSCAN25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057030 AK160369 AW195325 BC069644 BC074902
RefSeq transcript (Entrez)NM_001350979 NM_001350980 NM_001350981 NM_001350982 NM_001350983 NM_001350984 NM_001350985 NM_001350986 NM_145115
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN25
Cluster EST : UnigeneHs.446297 [ NCBI ]
CGAP (NCI)Hs.446297
Alternative Splicing GalleryENSG00000197037
Gene ExpressionZSCAN25 [ NCBI-GEO ]   ZSCAN25 [ EBI - ARRAY_EXPRESS ]   ZSCAN25 [ SEEK ]   ZSCAN25 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221785
GTEX Portal (Tissue expression)ZSCAN25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSZ9
Splice isoforms : SwissVarQ6NSZ9
PhosPhoSitePlusQ6NSZ9
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN25
DMDM Disease mutations221785
Blocks (Seattle)ZSCAN25
SuperfamilyQ6NSZ9
Human Protein AtlasENSG00000197037
Peptide AtlasQ6NSZ9
HPRD15807
IPIIPI00456907   IPI00873315   IPI00657730   IPI00873144   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSZ9
IntAct (EBI)Q6NSZ9
FunCoupENSG00000197037
BioGRIDZSCAN25
STRING (EMBL)ZSCAN25
ZODIACZSCAN25
Ontologies - Pathways
QuickGOQ6NSZ9
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZSCAN25
Atlas of Cancer Signalling NetworkZSCAN25
Wikipedia pathwaysZSCAN25
Orthology - Evolution
OrthoDB221785
GeneTree (enSembl)ENSG00000197037
Phylogenetic Trees/Animal Genes : TreeFamZSCAN25
HOVERGENQ6NSZ9
HOGENOMQ6NSZ9
Homologs : HomoloGeneZSCAN25
Homology/Alignments : Family Browser (UCSC)ZSCAN25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN25
dbVarZSCAN25
ClinVarZSCAN25
1000_GenomesZSCAN25 
Exome Variant ServerZSCAN25
ExAC (Exome Aggregation Consortium)ZSCAN25 (select the gene name)
Genetic variants : HAPMAP221785
Genomic Variants (DGV)ZSCAN25 [DGVbeta]
DECIPHERZSCAN25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN25 
Mutations
ICGC Data PortalZSCAN25 
TCGA Data PortalZSCAN25 
Broad Tumor PortalZSCAN25
OASIS PortalZSCAN25 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZSCAN25
BioMutasearch ZSCAN25
DgiDB (Drug Gene Interaction Database)ZSCAN25
DoCM (Curated mutations)ZSCAN25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN25 (select a term)
intoGenZSCAN25
Cancer3DZSCAN25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSCAN25
Genetic Testing Registry ZSCAN25
NextProtQ6NSZ9 [Medical]
TSGene221785
GENETestsZSCAN25
Target ValidationZSCAN25
Huge Navigator ZSCAN25 [HugePedia]
snp3D : Map Gene to Disease221785
BioCentury BCIQZSCAN25
ClinGenZSCAN25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221785
Chemical/Pharm GKB GenePA134962723
Clinical trialZSCAN25
Miscellaneous
canSAR (ICR)ZSCAN25 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN25
EVEXZSCAN25
GoPubMedZSCAN25
iHOPZSCAN25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:33 CEST 2017

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