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ZSCAN26 (zinc finger and SCAN domain containing 26)

Identity

Alias_namesZNF187
zinc finger protein 187
Alias_symbol (synonym)SRE-ZBP
Other aliasSREZBP
HGNC (Hugo) ZSCAN26
LocusID (NCBI) 7741
Atlas_Id 76497
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28267010 and ends at 28278223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN26   12978
Cards
Entrez_Gene (NCBI)ZSCAN26  7741  zinc finger and SCAN domain containing 26
AliasesSRE-ZBP; SREZBP; ZNF187
GeneCards (Weizmann)ZSCAN26
Ensembl hg19 (Hinxton)ENSG00000197062 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197062 [Gene_View]  ENSG00000197062 [Sequence]  chr6:28267010-28278223 [Contig_View]  ZSCAN26 [Vega]
ICGC DataPortalENSG00000197062
TCGA cBioPortalZSCAN26
AceView (NCBI)ZSCAN26
Genatlas (Paris)ZSCAN26
WikiGenes7741
SOURCE (Princeton)ZSCAN26
Genetics Home Reference (NIH)ZSCAN26
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN26  -     chr6:28267010-28278223 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN26  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN26 - 6p22.1 [CytoView hg19]  ZSCAN26 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN26 [Mapview hg19]  ZSCAN26 [Mapview hg38]
OMIM616474   
Gene and transcription
Genbank (Entrez)AJ420533 AK095948 AK293524 AK295393 AK297613
RefSeq transcript (Entrez)NM_001023560 NM_001111039 NM_001287421 NM_001287422 NM_007151 NM_152736
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN26
Cluster EST : UnigeneHs.157883 [ NCBI ]
CGAP (NCI)Hs.157883
Alternative Splicing GalleryENSG00000197062
Gene ExpressionZSCAN26 [ NCBI-GEO ]   ZSCAN26 [ EBI - ARRAY_EXPRESS ]   ZSCAN26 [ SEEK ]   ZSCAN26 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7741
GTEX Portal (Tissue expression)ZSCAN26
Human Protein AtlasENSG00000197062-ZSCAN26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16670   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16670  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16670
Splice isoforms : SwissVarQ16670
PhosPhoSitePlusQ16670
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN26
DMDM Disease mutations7741
Blocks (Seattle)ZSCAN26
SuperfamilyQ16670
Human Protein Atlas [tissue]ENSG00000197062-ZSCAN26 [tissue]
Peptide AtlasQ16670
HPRD15746
IPIIPI00869339   IPI00880146   IPI00293776   
Protein Interaction databases
DIP (DOE-UCLA)Q16670
IntAct (EBI)Q16670
FunCoupENSG00000197062
BioGRIDZSCAN26
STRING (EMBL)ZSCAN26
ZODIACZSCAN26
Ontologies - Pathways
QuickGOQ16670
Ontology : AmiGOnucleic acid binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZSCAN26
Atlas of Cancer Signalling NetworkZSCAN26
Wikipedia pathwaysZSCAN26
Orthology - Evolution
OrthoDB7741
GeneTree (enSembl)ENSG00000197062
Phylogenetic Trees/Animal Genes : TreeFamZSCAN26
HOVERGENQ16670
HOGENOMQ16670
Homologs : HomoloGeneZSCAN26
Homology/Alignments : Family Browser (UCSC)ZSCAN26
Gene fusions - Rearrangements
Fusion : QuiverZSCAN26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN26
dbVarZSCAN26
ClinVarZSCAN26
1000_GenomesZSCAN26 
Exome Variant ServerZSCAN26
ExAC (Exome Aggregation Consortium)ENSG00000197062
GNOMAD BrowserENSG00000197062
Varsome BrowserZSCAN26
Genetic variants : HAPMAP7741
Genomic Variants (DGV)ZSCAN26 [DGVbeta]
DECIPHERZSCAN26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN26 
Mutations
ICGC Data PortalZSCAN26 
TCGA Data PortalZSCAN26 
Broad Tumor PortalZSCAN26
OASIS PortalZSCAN26 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZSCAN26
BioMutasearch ZSCAN26
DgiDB (Drug Gene Interaction Database)ZSCAN26
DoCM (Curated mutations)ZSCAN26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN26 (select a term)
intoGenZSCAN26
Cancer3DZSCAN26(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616474   
Orphanet
DisGeNETZSCAN26
MedgenZSCAN26
Genetic Testing Registry ZSCAN26
NextProtQ16670 [Medical]
TSGene7741
GENETestsZSCAN26
Target ValidationZSCAN26
Huge Navigator ZSCAN26 [HugePedia]
snp3D : Map Gene to Disease7741
BioCentury BCIQZSCAN26
ClinGenZSCAN26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7741
Chemical/Pharm GKB GenePA37559
Clinical trialZSCAN26
Miscellaneous
canSAR (ICR)ZSCAN26 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN26
EVEXZSCAN26
GoPubMedZSCAN26
iHOPZSCAN26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:41:01 CEST 2018

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