Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZSCAN29 (zinc finger and SCAN domain containing 29)

Identity

Alias_namesZNF690
zinc finger protein 690
Alias_symbol (synonym)FLJ35867
Zfp690
Other alias
HGNC (Hugo) ZSCAN29
LocusID (NCBI) 146050
Atlas_Id 76498
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43358172 and ends at 43370060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KLK10 (19q13.41) / ZSCAN29 (15q15.3)TUBA1B (12q13.12) / ZSCAN29 (15q15.3)ZSCAN29 (15q15.3) / MGMT (10q26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN29   26673
Cards
Entrez_Gene (NCBI)ZSCAN29  146050  zinc finger and SCAN domain containing 29
AliasesZNF690; Zfp690
GeneCards (Weizmann)ZSCAN29
Ensembl hg19 (Hinxton)ENSG00000140265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140265 [Gene_View]  chr15:43358172-43370060 [Contig_View]  ZSCAN29 [Vega]
ICGC DataPortalENSG00000140265
TCGA cBioPortalZSCAN29
AceView (NCBI)ZSCAN29
Genatlas (Paris)ZSCAN29
WikiGenes146050
SOURCE (Princeton)ZSCAN29
Genetics Home Reference (NIH)ZSCAN29
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN29  -     chr15:43358172-43370060 -  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN29  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblZSCAN29 - 15q15.3 [CytoView hg19]  ZSCAN29 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBIZSCAN29 [Mapview hg19]  ZSCAN29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF525399 AK023525 AK093186 AK093377 AK098289
RefSeq transcript (Entrez)NM_152455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN29
Cluster EST : UnigeneHs.418287 [ NCBI ]
CGAP (NCI)Hs.418287
Alternative Splicing GalleryENSG00000140265
Gene ExpressionZSCAN29 [ NCBI-GEO ]   ZSCAN29 [ EBI - ARRAY_EXPRESS ]   ZSCAN29 [ SEEK ]   ZSCAN29 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146050
GTEX Portal (Tissue expression)ZSCAN29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWY8
Splice isoforms : SwissVarQ8IWY8
PhosPhoSitePlusQ8IWY8
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN29
DMDM Disease mutations146050
Blocks (Seattle)ZSCAN29
SuperfamilyQ8IWY8
Human Protein AtlasENSG00000140265
Peptide AtlasQ8IWY8
HPRD08766
IPIIPI00748630   IPI00940653   IPI00748766   IPI00217438   IPI00807656   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWY8
IntAct (EBI)Q8IWY8
FunCoupENSG00000140265
BioGRIDZSCAN29
STRING (EMBL)ZSCAN29
ZODIACZSCAN29
Ontologies - Pathways
QuickGOQ8IWY8
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZSCAN29
Atlas of Cancer Signalling NetworkZSCAN29
Wikipedia pathwaysZSCAN29
Orthology - Evolution
OrthoDB146050
GeneTree (enSembl)ENSG00000140265
Phylogenetic Trees/Animal Genes : TreeFamZSCAN29
HOVERGENQ8IWY8
HOGENOMQ8IWY8
Homologs : HomoloGeneZSCAN29
Homology/Alignments : Family Browser (UCSC)ZSCAN29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN29
dbVarZSCAN29
ClinVarZSCAN29
1000_GenomesZSCAN29 
Exome Variant ServerZSCAN29
ExAC (Exome Aggregation Consortium)ZSCAN29 (select the gene name)
Genetic variants : HAPMAP146050
Genomic Variants (DGV)ZSCAN29 [DGVbeta]
DECIPHERZSCAN29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN29 
Mutations
ICGC Data PortalZSCAN29 
TCGA Data PortalZSCAN29 
Broad Tumor PortalZSCAN29
OASIS PortalZSCAN29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN29
DgiDB (Drug Gene Interaction Database)ZSCAN29
DoCM (Curated mutations)ZSCAN29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN29 (select a term)
intoGenZSCAN29
Cancer3DZSCAN29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSCAN29
Genetic Testing Registry ZSCAN29
NextProtQ8IWY8 [Medical]
TSGene146050
GENETestsZSCAN29
Target ValidationZSCAN29
Huge Navigator ZSCAN29 [HugePedia]
snp3D : Map Gene to Disease146050
BioCentury BCIQZSCAN29
ClinGenZSCAN29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146050
Chemical/Pharm GKB GenePA162411015
Clinical trialZSCAN29
Miscellaneous
canSAR (ICR)ZSCAN29 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN29
EVEXZSCAN29
GoPubMedZSCAN29
iHOPZSCAN29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:45:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.