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ZSCAN30 (zinc finger and SCAN domain containing 30)

Identity

Alias_namesZNF397OS
zinc finger protein 397 opposite strand
ZNF397 opposite strand
Alias_symbol (synonym)ZNF917
Other aliasZNF-WYM
HGNC (Hugo) ZSCAN30
LocusID (NCBI) 100101467
Atlas_Id 55533
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 32831022 and ends at 32870209 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZSCAN30 (18q12.2) / BRAF (7q34)ZSCAN30 (18q12.2) / GALNT1 (18q12.2)ZSCAN30 (18q12.2) / GNB1 (1p36.33)
ZSCAN30 18q12.2 / BRAF 7q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN30   33517
Cards
Entrez_Gene (NCBI)ZSCAN30  100101467  zinc finger and SCAN domain containing 30
AliasesZNF-WYM; ZNF397OS; ZNF917
GeneCards (Weizmann)ZSCAN30
Ensembl hg19 (Hinxton)ENSG00000186814 [Gene_View]  chr18:32831022-32870209 [Contig_View]  ZSCAN30 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186814 [Gene_View]  chr18:32831022-32870209 [Contig_View]  ZSCAN30 [Vega]
ICGC DataPortalENSG00000186814
TCGA cBioPortalZSCAN30
AceView (NCBI)ZSCAN30
Genatlas (Paris)ZSCAN30
WikiGenes100101467
SOURCE (Princeton)ZSCAN30
Genetics Home Reference (NIH)ZSCAN30
Genomic and cartography
GoldenPath hg19 (UCSC)ZSCAN30  -     chr18:32831022-32870209 -  18q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZSCAN30  -     18q12.2   [Description]    (hg38-Dec_2013)
EnsemblZSCAN30 - 18q12.2 [CytoView hg19]  ZSCAN30 - 18q12.2 [CytoView hg38]
Mapping of homologs : NCBIZSCAN30 [Mapview hg19]  ZSCAN30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA988135 AF303374 AK001503 AK057386 AK128697
RefSeq transcript (Entrez)NM_001112734 NM_001166012 NM_001288711
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)ZSCAN30
Cluster EST : UnigeneHs.619840 [ NCBI ]
CGAP (NCI)Hs.619840
Alternative Splicing GalleryENSG00000186814
Gene ExpressionZSCAN30 [ NCBI-GEO ]   ZSCAN30 [ EBI - ARRAY_EXPRESS ]   ZSCAN30 [ SEEK ]   ZSCAN30 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100101467
GTEX Portal (Tissue expression)ZSCAN30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86W11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W11
Splice isoforms : SwissVarQ86W11
PhosPhoSitePlusQ86W11
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN30
DMDM Disease mutations100101467
Blocks (Seattle)ZSCAN30
SuperfamilyQ86W11
Human Protein AtlasENSG00000186814
Peptide AtlasQ86W11
IPIIPI00328954   IPI00856094   IPI00442270   IPI00953319   IPI00478495   IPI00984479   
Protein Interaction databases
DIP (DOE-UCLA)Q86W11
IntAct (EBI)Q86W11
FunCoupENSG00000186814
BioGRIDZSCAN30
STRING (EMBL)ZSCAN30
ZODIACZSCAN30
Ontologies - Pathways
QuickGOQ86W11
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  metal ion binding  
NDEx NetworkZSCAN30
Atlas of Cancer Signalling NetworkZSCAN30
Wikipedia pathwaysZSCAN30
Orthology - Evolution
OrthoDB100101467
GeneTree (enSembl)ENSG00000186814
Phylogenetic Trees/Animal Genes : TreeFamZSCAN30
HOVERGENQ86W11
HOGENOMQ86W11
Homologs : HomoloGeneZSCAN30
Homology/Alignments : Family Browser (UCSC)ZSCAN30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN30
dbVarZSCAN30
ClinVarZSCAN30
1000_GenomesZSCAN30 
Exome Variant ServerZSCAN30
ExAC (Exome Aggregation Consortium)ZSCAN30 (select the gene name)
Genetic variants : HAPMAP100101467
Genomic Variants (DGV)ZSCAN30 [DGVbeta]
DECIPHER (Syndromes)18:32831022-32870209  ENSG00000186814
CONAN: Copy Number AnalysisZSCAN30 
Mutations
ICGC Data PortalZSCAN30 
TCGA Data PortalZSCAN30 
Broad Tumor PortalZSCAN30
OASIS PortalZSCAN30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN30
DgiDB (Drug Gene Interaction Database)ZSCAN30
DoCM (Curated mutations)ZSCAN30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN30 (select a term)
intoGenZSCAN30
Cancer3DZSCAN30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSCAN30
Genetic Testing Registry ZSCAN30
NextProtQ86W11 [Medical]
TSGene100101467
GENETestsZSCAN30
Huge Navigator ZSCAN30 [HugePedia]
snp3D : Map Gene to Disease100101467
BioCentury BCIQZSCAN30
ClinGenZSCAN30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100101467
Chemical/Pharm GKB GenePA165429212
Clinical trialZSCAN30
Miscellaneous
canSAR (ICR)ZSCAN30 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN30
EVEXZSCAN30
GoPubMedZSCAN30
iHOPZSCAN30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:35:20 CET 2017

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