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ZSCAN31 (zinc finger and SCAN domain containing 31)

Identity

Other aliasZNF20-Lp
ZNF310P
ZNF323
HGNC (Hugo) ZSCAN31
LocusID (NCBI) 64288
Atlas_Id 57231
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28324738 and ends at 28354195 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN31   14097
Cards
Entrez_Gene (NCBI)ZSCAN31  64288  zinc finger and SCAN domain containing 31
AliasesZNF20-Lp; ZNF310P; ZNF323
GeneCards (Weizmann)ZSCAN31
Ensembl hg19 (Hinxton)ENSG00000235109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235109 [Gene_View]  ENSG00000235109 [Sequence]  chr6:28324738-28354195 [Contig_View]  ZSCAN31 [Vega]
ICGC DataPortalENSG00000235109
TCGA cBioPortalZSCAN31
AceView (NCBI)ZSCAN31
Genatlas (Paris)ZSCAN31
WikiGenes64288
SOURCE (Princeton)ZSCAN31
Genetics Home Reference (NIH)ZSCAN31
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN31  -     chr6:28324738-28354195 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN31  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN31 - 6p22.1 [CytoView hg19]  ZSCAN31 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN31 [Mapview hg19]  ZSCAN31 [Mapview hg38]
OMIM610794   
Gene and transcription
Genbank (Entrez)AF513019 AK027060 AK057702 AK095261 AK123280
RefSeq transcript (Entrez)NM_001135215 NM_001135216 NM_001243241 NM_001243242 NM_001243243 NM_001243244 NM_030899 NM_145909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN31
Cluster EST : UnigeneHs.656413 [ NCBI ]
CGAP (NCI)Hs.656413
Alternative Splicing GalleryENSG00000235109
Gene ExpressionZSCAN31 [ NCBI-GEO ]   ZSCAN31 [ EBI - ARRAY_EXPRESS ]   ZSCAN31 [ SEEK ]   ZSCAN31 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64288
GTEX Portal (Tissue expression)ZSCAN31
Human Protein AtlasENSG00000235109-ZSCAN31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LW9
Splice isoforms : SwissVarQ96LW9
PhosPhoSitePlusQ96LW9
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN31
DMDM Disease mutations64288
Blocks (Seattle)ZSCAN31
SuperfamilyQ96LW9
Human Protein Atlas [tissue]ENSG00000235109-ZSCAN31 [tissue]
Peptide AtlasQ96LW9
IPIIPI00162664   IPI00397228   IPI00926900   IPI00927084   IPI00927315   IPI00927529   IPI00926108   IPI00926296   IPI00926469   IPI00926651   IPI00925880   IPI00926150   IPI00926350   
Protein Interaction databases
DIP (DOE-UCLA)Q96LW9
IntAct (EBI)Q96LW9
FunCoupENSG00000235109
BioGRIDZSCAN31
STRING (EMBL)ZSCAN31
ZODIACZSCAN31
Ontologies - Pathways
QuickGOQ96LW9
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZSCAN31
Atlas of Cancer Signalling NetworkZSCAN31
Wikipedia pathwaysZSCAN31
Orthology - Evolution
OrthoDB64288
GeneTree (enSembl)ENSG00000235109
Phylogenetic Trees/Animal Genes : TreeFamZSCAN31
HOVERGENQ96LW9
HOGENOMQ96LW9
Homologs : HomoloGeneZSCAN31
Homology/Alignments : Family Browser (UCSC)ZSCAN31
Gene fusions - Rearrangements
Fusion : QuiverZSCAN31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN31
dbVarZSCAN31
ClinVarZSCAN31
1000_GenomesZSCAN31 
Exome Variant ServerZSCAN31
ExAC (Exome Aggregation Consortium)ENSG00000235109
GNOMAD BrowserENSG00000235109
Varsome BrowserZSCAN31
Genetic variants : HAPMAP64288
Genomic Variants (DGV)ZSCAN31 [DGVbeta]
DECIPHERZSCAN31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN31 
Mutations
ICGC Data PortalZSCAN31 
TCGA Data PortalZSCAN31 
Broad Tumor PortalZSCAN31
OASIS PortalZSCAN31 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZSCAN31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN31
DgiDB (Drug Gene Interaction Database)ZSCAN31
DoCM (Curated mutations)ZSCAN31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN31 (select a term)
intoGenZSCAN31
Cancer3DZSCAN31(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610794   
Orphanet
DisGeNETZSCAN31
MedgenZSCAN31
Genetic Testing Registry ZSCAN31
NextProtQ96LW9 [Medical]
TSGene64288
GENETestsZSCAN31
Target ValidationZSCAN31
Huge Navigator ZSCAN31 [HugePedia]
snp3D : Map Gene to Disease64288
BioCentury BCIQZSCAN31
ClinGenZSCAN31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64288
Chemical/Pharm GKB GenePA37840
Clinical trialZSCAN31
Miscellaneous
canSAR (ICR)ZSCAN31 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN31
EVEXZSCAN31
GoPubMedZSCAN31
iHOPZSCAN31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:51:56 CET 2018

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