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ZSCAN32 (zinc finger and SCAN domain containing 32)

Identity

Alias_namesZNF434
zinc finger protein 434
Alias_symbol (synonym)FLJ20417
Other aliasHCCS-5
HGNC (Hugo) ZSCAN32
LocusID (NCBI) 54925
Atlas_Id 76501
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3382081 and ends at 3401065 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN32   20812
Cards
Entrez_Gene (NCBI)ZSCAN32  54925  zinc finger and SCAN domain containing 32
AliasesHCCS-5; ZNF434
GeneCards (Weizmann)ZSCAN32
Ensembl hg19 (Hinxton)ENSG00000140987 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140987 [Gene_View]  chr16:3382081-3401065 [Contig_View]  ZSCAN32 [Vega]
ICGC DataPortalENSG00000140987
TCGA cBioPortalZSCAN32
AceView (NCBI)ZSCAN32
Genatlas (Paris)ZSCAN32
WikiGenes54925
SOURCE (Princeton)ZSCAN32
Genetics Home Reference (NIH)ZSCAN32
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN32  -     chr16:3382081-3401065 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN32  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZSCAN32 - 16p13.3 [CytoView hg19]  ZSCAN32 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZSCAN32 [Mapview hg19]  ZSCAN32 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI039149 AK000424 AK056463 AK291213 AK299070
RefSeq transcript (Entrez)NM_001284527 NM_001284528 NM_001284529 NM_001324340 NM_001324341 NM_001324342 NM_001324343 NM_001324344 NM_001324345 NM_001324346 NM_017810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN32
Cluster EST : UnigeneHs.592078 [ NCBI ]
CGAP (NCI)Hs.592078
Alternative Splicing GalleryENSG00000140987
Gene ExpressionZSCAN32 [ NCBI-GEO ]   ZSCAN32 [ EBI - ARRAY_EXPRESS ]   ZSCAN32 [ SEEK ]   ZSCAN32 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54925
GTEX Portal (Tissue expression)ZSCAN32
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX65
Splice isoforms : SwissVarQ9NX65
PhosPhoSitePlusQ9NX65
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN32
DMDM Disease mutations54925
Blocks (Seattle)ZSCAN32
SuperfamilyQ9NX65
Human Protein AtlasENSG00000140987
Peptide AtlasQ9NX65
HPRD15791
IPIIPI00478574   IPI00910154   IPI00745668   IPI00909755   IPI00942260   IPI00328360   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX65
IntAct (EBI)Q9NX65
FunCoupENSG00000140987
BioGRIDZSCAN32
STRING (EMBL)ZSCAN32
ZODIACZSCAN32
Ontologies - Pathways
QuickGOQ9NX65
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZSCAN32
Atlas of Cancer Signalling NetworkZSCAN32
Wikipedia pathwaysZSCAN32
Orthology - Evolution
OrthoDB54925
GeneTree (enSembl)ENSG00000140987
Phylogenetic Trees/Animal Genes : TreeFamZSCAN32
HOVERGENQ9NX65
HOGENOMQ9NX65
Homologs : HomoloGeneZSCAN32
Homology/Alignments : Family Browser (UCSC)ZSCAN32
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN32
dbVarZSCAN32
ClinVarZSCAN32
1000_GenomesZSCAN32 
Exome Variant ServerZSCAN32
ExAC (Exome Aggregation Consortium)ZSCAN32 (select the gene name)
Genetic variants : HAPMAP54925
Genomic Variants (DGV)ZSCAN32 [DGVbeta]
DECIPHERZSCAN32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN32 
Mutations
ICGC Data PortalZSCAN32 
TCGA Data PortalZSCAN32 
Broad Tumor PortalZSCAN32
OASIS PortalZSCAN32 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZSCAN32
BioMutasearch ZSCAN32
DgiDB (Drug Gene Interaction Database)ZSCAN32
DoCM (Curated mutations)ZSCAN32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN32 (select a term)
intoGenZSCAN32
Cancer3DZSCAN32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSCAN32
Genetic Testing Registry ZSCAN32
NextProtQ9NX65 [Medical]
TSGene54925
GENETestsZSCAN32
Target ValidationZSCAN32
Huge Navigator ZSCAN32 [HugePedia]
snp3D : Map Gene to Disease54925
BioCentury BCIQZSCAN32
ClinGenZSCAN32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54925
Chemical/Pharm GKB GenePA134902932
Clinical trialZSCAN32
Miscellaneous
canSAR (ICR)ZSCAN32 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN32
EVEXZSCAN32
GoPubMedZSCAN32
iHOPZSCAN32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:34 CEST 2017

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