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ZSCAN4 (zinc finger and SCAN domain containing 4)

Identity

Alias_namesZNF494
zinc finger protein 494
Alias_symbol (synonym)FLJ35105
Other alias
HGNC (Hugo) ZSCAN4
LocusID (NCBI) 201516
Atlas_Id 55746
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58180303 and ends at 58190520 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF587 (19q13.43) / ZSCAN4 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN4   23709
Cards
Entrez_Gene (NCBI)ZSCAN4  201516  zinc finger and SCAN domain containing 4
AliasesZNF494
GeneCards (Weizmann)ZSCAN4
Ensembl hg19 (Hinxton)ENSG00000180532 [Gene_View]  chr19:58180303-58190520 [Contig_View]  ZSCAN4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180532 [Gene_View]  chr19:58180303-58190520 [Contig_View]  ZSCAN4 [Vega]
ICGC DataPortalENSG00000180532
TCGA cBioPortalZSCAN4
AceView (NCBI)ZSCAN4
Genatlas (Paris)ZSCAN4
WikiGenes201516
SOURCE (Princeton)ZSCAN4
Genetics Home Reference (NIH)ZSCAN4
Genomic and cartography
GoldenPath hg19 (UCSC)ZSCAN4  -     chr19:58180303-58190520 +  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZSCAN4  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZSCAN4 - 19q13.43 [CytoView hg19]  ZSCAN4 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZSCAN4 [Mapview hg19]  ZSCAN4 [Mapview hg38]
OMIM613419   
Gene and transcription
Genbank (Entrez)AK092424 BC101738 BC101740 BX118882 EU446682
RefSeq transcript (Entrez)NM_152677
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZSCAN4
Cluster EST : UnigeneHs.469663 [ NCBI ]
CGAP (NCI)Hs.469663
Alternative Splicing GalleryENSG00000180532
Gene ExpressionZSCAN4 [ NCBI-GEO ]   ZSCAN4 [ EBI - ARRAY_EXPRESS ]   ZSCAN4 [ SEEK ]   ZSCAN4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201516
GTEX Portal (Tissue expression)ZSCAN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAM6
Splice isoforms : SwissVarQ8NAM6
PhosPhoSitePlusQ8NAM6
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN4
DMDM Disease mutations201516
Blocks (Seattle)ZSCAN4
SuperfamilyQ8NAM6
Human Protein AtlasENSG00000180532
Peptide AtlasQ8NAM6
HPRD15899
IPIIPI00168043   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAM6
IntAct (EBI)Q8NAM6
FunCoupENSG00000180532
BioGRIDZSCAN4
STRING (EMBL)ZSCAN4
ZODIACZSCAN4
Ontologies - Pathways
QuickGOQ8NAM6
Ontology : AmiGOnuclear chromosome, telomeric region  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  telomere maintenance via telomere lengthening  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBInuclear chromosome, telomeric region  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  telomere maintenance via telomere lengthening  sequence-specific DNA binding  metal ion binding  
NDEx NetworkZSCAN4
Atlas of Cancer Signalling NetworkZSCAN4
Wikipedia pathwaysZSCAN4
Orthology - Evolution
OrthoDB201516
GeneTree (enSembl)ENSG00000180532
Phylogenetic Trees/Animal Genes : TreeFamZSCAN4
HOVERGENQ8NAM6
HOGENOMQ8NAM6
Homologs : HomoloGeneZSCAN4
Homology/Alignments : Family Browser (UCSC)ZSCAN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN4
dbVarZSCAN4
ClinVarZSCAN4
1000_GenomesZSCAN4 
Exome Variant ServerZSCAN4
ExAC (Exome Aggregation Consortium)ZSCAN4 (select the gene name)
Genetic variants : HAPMAP201516
Genomic Variants (DGV)ZSCAN4 [DGVbeta]
DECIPHER (Syndromes)19:58180303-58190520  ENSG00000180532
CONAN: Copy Number AnalysisZSCAN4 
Mutations
ICGC Data PortalZSCAN4 
TCGA Data PortalZSCAN4 
Broad Tumor PortalZSCAN4
OASIS PortalZSCAN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN4
DgiDB (Drug Gene Interaction Database)ZSCAN4
DoCM (Curated mutations)ZSCAN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN4 (select a term)
intoGenZSCAN4
Cancer3DZSCAN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613419   
Orphanet
MedgenZSCAN4
Genetic Testing Registry ZSCAN4
NextProtQ8NAM6 [Medical]
TSGene201516
GENETestsZSCAN4
Huge Navigator ZSCAN4 [HugePedia]
snp3D : Map Gene to Disease201516
BioCentury BCIQZSCAN4
ClinGenZSCAN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201516
Chemical/Pharm GKB GenePA134878313
Clinical trialZSCAN4
Miscellaneous
canSAR (ICR)ZSCAN4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN4
EVEXZSCAN4
GoPubMedZSCAN4
iHOPZSCAN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:59 CEST 2017

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