Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZSCAN5A (zinc finger and SCAN domain containing 5A)

Identity

Alias_namesZNF495
ZSCAN5
zinc finger protein 495
zinc finger and SCAN domain containing 5
Alias_symbol (synonym)MGC4161
Other alias
HGNC (Hugo) ZSCAN5A
LocusID (NCBI) 79149
Atlas_Id 76503
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56221303 and ends at 56314925 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CBX5 (12q13.13) / ZSCAN5A (19q13.43)ZSCAN5A (19q13.43) / TESK1 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN5A   23710
Cards
Entrez_Gene (NCBI)ZSCAN5A  79149  zinc finger and SCAN domain containing 5A
AliasesZNF495; ZSCAN5
GeneCards (Weizmann)ZSCAN5A
Ensembl hg19 (Hinxton)ENSG00000131848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131848 [Gene_View]  chr19:56221303-56314925 [Contig_View]  ZSCAN5A [Vega]
ICGC DataPortalENSG00000131848
TCGA cBioPortalZSCAN5A
AceView (NCBI)ZSCAN5A
Genatlas (Paris)ZSCAN5A
WikiGenes79149
SOURCE (Princeton)ZSCAN5A
Genetics Home Reference (NIH)ZSCAN5A
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN5A  -     chr19:56221303-56314925 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN5A  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZSCAN5A - 19q13.43 [CytoView hg19]  ZSCAN5A - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZSCAN5A [Mapview hg19]  ZSCAN5A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI699820 AK098700 AK223485 AK301873 AK310500
RefSeq transcript (Entrez)NM_001322061 NM_001322062 NM_001322064 NM_001322065 NM_001322066 NM_001322067 NM_001322068 NM_001322069 NM_001322070 NM_001322072 NM_001322073 NM_001322074 NM_001322075 NM_001322076 NM_001322077 NM_001322078 NM_024303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN5A
Cluster EST : UnigeneHs.733089 [ NCBI ]
CGAP (NCI)Hs.733089
Alternative Splicing GalleryENSG00000131848
Gene ExpressionZSCAN5A [ NCBI-GEO ]   ZSCAN5A [ EBI - ARRAY_EXPRESS ]   ZSCAN5A [ SEEK ]   ZSCAN5A [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN5A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79149
GTEX Portal (Tissue expression)ZSCAN5A
Human Protein AtlasENSG00000131848-ZSCAN5A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUG6
Splice isoforms : SwissVarQ9BUG6
PhosPhoSitePlusQ9BUG6
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN5A
DMDM Disease mutations79149
Blocks (Seattle)ZSCAN5A
SuperfamilyQ9BUG6
Human Protein Atlas [tissue]ENSG00000131848-ZSCAN5A [tissue]
Peptide AtlasQ9BUG6
HPRD15900
IPIIPI00013284   IPI01014773   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUG6
IntAct (EBI)Q9BUG6
FunCoupENSG00000131848
BioGRIDZSCAN5A
STRING (EMBL)ZSCAN5A
ZODIACZSCAN5A
Ontologies - Pathways
QuickGOQ9BUG6
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZSCAN5A
Atlas of Cancer Signalling NetworkZSCAN5A
Wikipedia pathwaysZSCAN5A
Orthology - Evolution
OrthoDB79149
GeneTree (enSembl)ENSG00000131848
Phylogenetic Trees/Animal Genes : TreeFamZSCAN5A
HOVERGENQ9BUG6
HOGENOMQ9BUG6
Homologs : HomoloGeneZSCAN5A
Homology/Alignments : Family Browser (UCSC)ZSCAN5A
Gene fusions - Rearrangements
Tumor Fusion PortalZSCAN5A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN5A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN5A
dbVarZSCAN5A
ClinVarZSCAN5A
1000_GenomesZSCAN5A 
Exome Variant ServerZSCAN5A
ExAC (Exome Aggregation Consortium)ENSG00000131848
GNOMAD BrowserENSG00000131848
Genetic variants : HAPMAP79149
Genomic Variants (DGV)ZSCAN5A [DGVbeta]
DECIPHERZSCAN5A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN5A 
Mutations
ICGC Data PortalZSCAN5A 
TCGA Data PortalZSCAN5A 
Broad Tumor PortalZSCAN5A
OASIS PortalZSCAN5A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN5A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN5A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN5A
DgiDB (Drug Gene Interaction Database)ZSCAN5A
DoCM (Curated mutations)ZSCAN5A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN5A (select a term)
intoGenZSCAN5A
Cancer3DZSCAN5A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSCAN5A
MedgenZSCAN5A
Genetic Testing Registry ZSCAN5A
NextProtQ9BUG6 [Medical]
TSGene79149
GENETestsZSCAN5A
Target ValidationZSCAN5A
Huge Navigator ZSCAN5A [HugePedia]
snp3D : Map Gene to Disease79149
BioCentury BCIQZSCAN5A
ClinGenZSCAN5A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79149
Chemical/Pharm GKB GenePA162411030
Clinical trialZSCAN5A
Miscellaneous
canSAR (ICR)ZSCAN5A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN5A
EVEXZSCAN5A
GoPubMedZSCAN5A
iHOPZSCAN5A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:09 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.