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ZSCAN5B (zinc finger and SCAN domain containing 5B)

Identity

Alias_symbol (synonym)ZNF495B
ZNF371
Other alias
HGNC (Hugo) ZSCAN5B
LocusID (NCBI) 342933
Atlas_Id 76504
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56189689 and ends at 56193052 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN5B   34246
Cards
Entrez_Gene (NCBI)ZSCAN5B  342933  zinc finger and SCAN domain containing 5B
AliasesZNF371; ZNF495B
GeneCards (Weizmann)ZSCAN5B
Ensembl hg19 (Hinxton)ENSG00000197213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197213 [Gene_View]  chr19:56189689-56193052 [Contig_View]  ZSCAN5B [Vega]
ICGC DataPortalENSG00000197213
TCGA cBioPortalZSCAN5B
AceView (NCBI)ZSCAN5B
Genatlas (Paris)ZSCAN5B
WikiGenes342933
SOURCE (Princeton)ZSCAN5B
Genetics Home Reference (NIH)ZSCAN5B
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN5B  -     chr19:56189689-56193052 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN5B  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZSCAN5B - 19q13.43 [CytoView hg19]  ZSCAN5B - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZSCAN5B [Mapview hg19]  ZSCAN5B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI041519 BX094413 DW009806 EG328459
RefSeq transcript (Entrez)NM_001080456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN5B
Cluster EST : UnigeneHs.132130 [ NCBI ]
CGAP (NCI)Hs.132130
Alternative Splicing GalleryENSG00000197213
Gene ExpressionZSCAN5B [ NCBI-GEO ]   ZSCAN5B [ EBI - ARRAY_EXPRESS ]   ZSCAN5B [ SEEK ]   ZSCAN5B [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342933
GTEX Portal (Tissue expression)ZSCAN5B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJL1
Splice isoforms : SwissVarA6NJL1
PhosPhoSitePlusA6NJL1
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN5B
DMDM Disease mutations342933
Blocks (Seattle)ZSCAN5B
SuperfamilyA6NJL1
Human Protein AtlasENSG00000197213
Peptide AtlasA6NJL1
IPIIPI00247123   
Protein Interaction databases
DIP (DOE-UCLA)A6NJL1
IntAct (EBI)A6NJL1
FunCoupENSG00000197213
BioGRIDZSCAN5B
STRING (EMBL)ZSCAN5B
ZODIACZSCAN5B
Ontologies - Pathways
QuickGOA6NJL1
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZSCAN5B
Atlas of Cancer Signalling NetworkZSCAN5B
Wikipedia pathwaysZSCAN5B
Orthology - Evolution
OrthoDB342933
GeneTree (enSembl)ENSG00000197213
Phylogenetic Trees/Animal Genes : TreeFamZSCAN5B
HOVERGENA6NJL1
HOGENOMA6NJL1
Homologs : HomoloGeneZSCAN5B
Homology/Alignments : Family Browser (UCSC)ZSCAN5B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN5B
dbVarZSCAN5B
ClinVarZSCAN5B
1000_GenomesZSCAN5B 
Exome Variant ServerZSCAN5B
ExAC (Exome Aggregation Consortium)ZSCAN5B (select the gene name)
Genetic variants : HAPMAP342933
Genomic Variants (DGV)ZSCAN5B [DGVbeta]
DECIPHERZSCAN5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN5B 
Mutations
ICGC Data PortalZSCAN5B 
TCGA Data PortalZSCAN5B 
Broad Tumor PortalZSCAN5B
OASIS PortalZSCAN5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN5B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN5B
DgiDB (Drug Gene Interaction Database)ZSCAN5B
DoCM (Curated mutations)ZSCAN5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN5B (select a term)
intoGenZSCAN5B
Cancer3DZSCAN5B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSCAN5B
Genetic Testing Registry ZSCAN5B
NextProtA6NJL1 [Medical]
TSGene342933
GENETestsZSCAN5B
Target ValidationZSCAN5B
Huge Navigator ZSCAN5B [HugePedia]
snp3D : Map Gene to Disease342933
BioCentury BCIQZSCAN5B
ClinGenZSCAN5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342933
Chemical/Pharm GKB GenePA162411031
Clinical trialZSCAN5B
Miscellaneous
canSAR (ICR)ZSCAN5B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN5B
EVEXZSCAN5B
GoPubMedZSCAN5B
iHOPZSCAN5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:34 CEST 2017

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