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ZSCAN9 (zinc finger and SCAN domain containing 9)

Identity

Alias_namesZNF193
zinc finger protein 193
Alias_symbol (synonym)PRD51
Other alias
HGNC (Hugo) ZSCAN9
LocusID (NCBI) 7746
Atlas_Id 54820
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28225251 and ends at 28233486 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZSCAN9 (6p22.1) / MRPS18A (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p21;p22) ZSCAN9/MRPS18A


External links

Nomenclature
HGNC (Hugo)ZSCAN9   12984
Cards
Entrez_Gene (NCBI)ZSCAN9  7746  zinc finger and SCAN domain containing 9
AliasesPRD51; ZNF193
GeneCards (Weizmann)ZSCAN9
Ensembl hg19 (Hinxton)ENSG00000137185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137185 [Gene_View]  ENSG00000137185 [Sequence]  chr6:28225251-28233486 [Contig_View]  ZSCAN9 [Vega]
ICGC DataPortalENSG00000137185
TCGA cBioPortalZSCAN9
AceView (NCBI)ZSCAN9
Genatlas (Paris)ZSCAN9
WikiGenes7746
SOURCE (Princeton)ZSCAN9
Genetics Home Reference (NIH)ZSCAN9
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN9  -     chr6:28225251-28233486 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN9  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN9 - 6p22.1 [CytoView hg19]  ZSCAN9 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN9 [Mapview hg19]  ZSCAN9 [Mapview hg38]
OMIM602246   
Gene and transcription
Genbank (Entrez)AK226035 AK304013 AU310237 AY261373 AY550973
RefSeq transcript (Entrez)NM_001199479 NM_001199480 NM_006299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN9
Cluster EST : UnigeneHs.731936 [ NCBI ]
CGAP (NCI)Hs.731936
Alternative Splicing GalleryENSG00000137185
Gene ExpressionZSCAN9 [ NCBI-GEO ]   ZSCAN9 [ EBI - ARRAY_EXPRESS ]   ZSCAN9 [ SEEK ]   ZSCAN9 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7746
GTEX Portal (Tissue expression)ZSCAN9
Human Protein AtlasENSG00000137185-ZSCAN9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15535   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15535  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15535
Splice isoforms : SwissVarO15535
PhosPhoSitePlusO15535
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN9
DMDM Disease mutations7746
Blocks (Seattle)ZSCAN9
SuperfamilyO15535
Human Protein Atlas [tissue]ENSG00000137185-ZSCAN9 [tissue]
Peptide AtlasO15535
HPRD03766
IPIIPI00007330   IPI00943333   IPI00976033   IPI00909838   IPI00979818   IPI00982717   
Protein Interaction databases
DIP (DOE-UCLA)O15535
IntAct (EBI)O15535
FunCoupENSG00000137185
BioGRIDZSCAN9
STRING (EMBL)ZSCAN9
ZODIACZSCAN9
Ontologies - Pathways
QuickGOO15535
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZSCAN9
Atlas of Cancer Signalling NetworkZSCAN9
Wikipedia pathwaysZSCAN9
Orthology - Evolution
OrthoDB7746
GeneTree (enSembl)ENSG00000137185
Phylogenetic Trees/Animal Genes : TreeFamZSCAN9
HOVERGENO15535
HOGENOMO15535
Homologs : HomoloGeneZSCAN9
Homology/Alignments : Family Browser (UCSC)ZSCAN9
Gene fusions - Rearrangements
Fusion : MitelmanZSCAN9/MRPS18A [6p22.1/6p21.1]  
Fusion : QuiverZSCAN9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN9
dbVarZSCAN9
ClinVarZSCAN9
1000_GenomesZSCAN9 
Exome Variant ServerZSCAN9
ExAC (Exome Aggregation Consortium)ENSG00000137185
GNOMAD BrowserENSG00000137185
Varsome BrowserZSCAN9
Genetic variants : HAPMAP7746
Genomic Variants (DGV)ZSCAN9 [DGVbeta]
DECIPHERZSCAN9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN9 
Mutations
ICGC Data PortalZSCAN9 
TCGA Data PortalZSCAN9 
Broad Tumor PortalZSCAN9
OASIS PortalZSCAN9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZSCAN9
BioMutasearch ZSCAN9
DgiDB (Drug Gene Interaction Database)ZSCAN9
DoCM (Curated mutations)ZSCAN9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN9 (select a term)
intoGenZSCAN9
Cancer3DZSCAN9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602246   
Orphanet
DisGeNETZSCAN9
MedgenZSCAN9
Genetic Testing Registry ZSCAN9
NextProtO15535 [Medical]
TSGene7746
GENETestsZSCAN9
Target ValidationZSCAN9
Huge Navigator ZSCAN9 [HugePedia]
snp3D : Map Gene to Disease7746
BioCentury BCIQZSCAN9
ClinGenZSCAN9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7746
Chemical/Pharm GKB GenePA37564
Clinical trialZSCAN9
Miscellaneous
canSAR (ICR)ZSCAN9 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN9
EVEXZSCAN9
GoPubMedZSCAN9
iHOPZSCAN9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:51:56 CET 2018

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