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ZSWIM1 (zinc finger SWIM-type containing 1)

Identity

Alias_namesC20orf162
chromosome 20 open reading frame 162
Alias_symbol (synonym)dJ337O18.5
Other alias
HGNC (Hugo) ZSWIM1
LocusID (NCBI) 90204
Atlas_Id 76505
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45881209 and ends at 45885266 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZSWIM1 (20q13.12) / DGAT1 (8q24.3)ZSWIM1 (20q13.12) / RASEF (9q21.32)ZSWIM1 (20q13.12) / ZSWIM1 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSWIM1   16155
Cards
Entrez_Gene (NCBI)ZSWIM1  90204  zinc finger SWIM-type containing 1
AliasesC20orf162
GeneCards (Weizmann)ZSWIM1
Ensembl hg19 (Hinxton)ENSG00000168612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168612 [Gene_View]  chr20:45881209-45885266 [Contig_View]  ZSWIM1 [Vega]
ICGC DataPortalENSG00000168612
TCGA cBioPortalZSWIM1
AceView (NCBI)ZSWIM1
Genatlas (Paris)ZSWIM1
WikiGenes90204
SOURCE (Princeton)ZSWIM1
Genetics Home Reference (NIH)ZSWIM1
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM1  -     chr20:45881209-45885266 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM1  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblZSWIM1 - 20q13.12 [CytoView hg19]  ZSWIM1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIZSWIM1 [Mapview hg19]  ZSWIM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291304 BC001672 BC080525
RefSeq transcript (Entrez)NM_080603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSWIM1
Cluster EST : UnigeneHs.517075 [ NCBI ]
CGAP (NCI)Hs.517075
Alternative Splicing GalleryENSG00000168612
Gene ExpressionZSWIM1 [ NCBI-GEO ]   ZSWIM1 [ EBI - ARRAY_EXPRESS ]   ZSWIM1 [ SEEK ]   ZSWIM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90204
GTEX Portal (Tissue expression)ZSWIM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR11
Splice isoforms : SwissVarQ9BR11
PhosPhoSitePlusQ9BR11
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)SWIM (PF04434)   
Domain families : Pfam (NCBI)pfam04434   
Conserved Domain (NCBI)ZSWIM1
DMDM Disease mutations90204
Blocks (Seattle)ZSWIM1
SuperfamilyQ9BR11
Human Protein AtlasENSG00000168612
Peptide AtlasQ9BR11
HPRD15901
IPIIPI00094590   
Protein Interaction databases
DIP (DOE-UCLA)Q9BR11
IntAct (EBI)Q9BR11
FunCoupENSG00000168612
BioGRIDZSWIM1
STRING (EMBL)ZSWIM1
ZODIACZSWIM1
Ontologies - Pathways
QuickGOQ9BR11
Ontology : AmiGOnucleus  zinc ion binding  
Ontology : EGO-EBInucleus  zinc ion binding  
NDEx NetworkZSWIM1
Atlas of Cancer Signalling NetworkZSWIM1
Wikipedia pathwaysZSWIM1
Orthology - Evolution
OrthoDB90204
GeneTree (enSembl)ENSG00000168612
Phylogenetic Trees/Animal Genes : TreeFamZSWIM1
HOVERGENQ9BR11
HOGENOMQ9BR11
Homologs : HomoloGeneZSWIM1
Homology/Alignments : Family Browser (UCSC)ZSWIM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM1
dbVarZSWIM1
ClinVarZSWIM1
1000_GenomesZSWIM1 
Exome Variant ServerZSWIM1
ExAC (Exome Aggregation Consortium)ZSWIM1 (select the gene name)
Genetic variants : HAPMAP90204
Genomic Variants (DGV)ZSWIM1 [DGVbeta]
DECIPHERZSWIM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM1 
Mutations
ICGC Data PortalZSWIM1 
TCGA Data PortalZSWIM1 
Broad Tumor PortalZSWIM1
OASIS PortalZSWIM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM1
DgiDB (Drug Gene Interaction Database)ZSWIM1
DoCM (Curated mutations)ZSWIM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM1 (select a term)
intoGenZSWIM1
Cancer3DZSWIM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSWIM1
Genetic Testing Registry ZSWIM1
NextProtQ9BR11 [Medical]
TSGene90204
GENETestsZSWIM1
Target ValidationZSWIM1
Huge Navigator ZSWIM1 [HugePedia]
snp3D : Map Gene to Disease90204
BioCentury BCIQZSWIM1
ClinGenZSWIM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90204
Chemical/Pharm GKB GenePA25704
Clinical trialZSWIM1
Miscellaneous
canSAR (ICR)ZSWIM1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM1
EVEXZSWIM1
GoPubMedZSWIM1
iHOPZSWIM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:34 CEST 2017

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