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ZSWIM2 (zinc finger SWIM-type containing 2)

Identity

Alias_symbol (synonym)MGC33890
ZZZ2
Other aliasMEX
HGNC (Hugo) ZSWIM2
LocusID (NCBI) 151112
Atlas_Id 76506
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 186827480 and ends at 186849170 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSWIM2   30990
Cards
Entrez_Gene (NCBI)ZSWIM2  151112  zinc finger SWIM-type containing 2
AliasesMEX; ZZZ2
GeneCards (Weizmann)ZSWIM2
Ensembl hg19 (Hinxton)ENSG00000163012 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163012 [Gene_View]  chr2:186827480-186849170 [Contig_View]  ZSWIM2 [Vega]
ICGC DataPortalENSG00000163012
TCGA cBioPortalZSWIM2
AceView (NCBI)ZSWIM2
Genatlas (Paris)ZSWIM2
WikiGenes151112
SOURCE (Princeton)ZSWIM2
Genetics Home Reference (NIH)ZSWIM2
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM2  -     chr2:186827480-186849170 -  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM2  -     2q32.1   [Description]    (hg19-Feb_2009)
EnsemblZSWIM2 - 2q32.1 [CytoView hg19]  ZSWIM2 - 2q32.1 [CytoView hg38]
Mapping of homologs : NCBIZSWIM2 [Mapview hg19]  ZSWIM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128006 BC031094 JF432747
RefSeq transcript (Entrez)NM_182521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSWIM2
Cluster EST : UnigeneHs.375054 [ NCBI ]
CGAP (NCI)Hs.375054
Alternative Splicing GalleryENSG00000163012
Gene ExpressionZSWIM2 [ NCBI-GEO ]   ZSWIM2 [ EBI - ARRAY_EXPRESS ]   ZSWIM2 [ SEEK ]   ZSWIM2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151112
GTEX Portal (Tissue expression)ZSWIM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEG5
Splice isoforms : SwissVarQ8NEG5
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8NEG5
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)    ZF_SWIM (PS50966)    ZF_ZZ_1 (PS01357)    ZF_ZZ_2 (PS50135)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_SWIM    Znf_ZZ   
Domain families : Pfam (Sanger)SWIM (PF04434)    zf-RING_2 (PF13639)    ZZ (PF00569)   
Domain families : Pfam (NCBI)pfam04434    pfam13639    pfam00569   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)ZSWIM2
DMDM Disease mutations151112
Blocks (Seattle)ZSWIM2
PDB (SRS)2DIP   
PDB (PDBSum)2DIP   
PDB (IMB)2DIP   
PDB (RSDB)2DIP   
Structural Biology KnowledgeBase2DIP   
SCOP (Structural Classification of Proteins)2DIP   
CATH (Classification of proteins structures)2DIP   
SuperfamilyQ8NEG5
Human Protein AtlasENSG00000163012
Peptide AtlasQ8NEG5
HPRD15902
IPIIPI00302370   IPI00917828   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEG5
IntAct (EBI)Q8NEG5
FunCoupENSG00000163012
BioGRIDZSWIM2
STRING (EMBL)ZSWIM2
ZODIACZSWIM2
Ontologies - Pathways
QuickGOQ8NEG5
Ontology : AmiGOprotein polyubiquitination  apoptotic process  zinc ion binding  protein self-association  ubiquitin protein ligase activity  positive regulation of extrinsic apoptotic signaling pathway via death domain receptors  
Ontology : EGO-EBIprotein polyubiquitination  apoptotic process  zinc ion binding  protein self-association  ubiquitin protein ligase activity  positive regulation of extrinsic apoptotic signaling pathway via death domain receptors  
NDEx NetworkZSWIM2
Atlas of Cancer Signalling NetworkZSWIM2
Wikipedia pathwaysZSWIM2
Orthology - Evolution
OrthoDB151112
GeneTree (enSembl)ENSG00000163012
Phylogenetic Trees/Animal Genes : TreeFamZSWIM2
HOVERGENQ8NEG5
HOGENOMQ8NEG5
Homologs : HomoloGeneZSWIM2
Homology/Alignments : Family Browser (UCSC)ZSWIM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM2
dbVarZSWIM2
ClinVarZSWIM2
1000_GenomesZSWIM2 
Exome Variant ServerZSWIM2
ExAC (Exome Aggregation Consortium)ZSWIM2 (select the gene name)
Genetic variants : HAPMAP151112
Genomic Variants (DGV)ZSWIM2 [DGVbeta]
DECIPHERZSWIM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM2 
Mutations
ICGC Data PortalZSWIM2 
TCGA Data PortalZSWIM2 
Broad Tumor PortalZSWIM2
OASIS PortalZSWIM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM2
DgiDB (Drug Gene Interaction Database)ZSWIM2
DoCM (Curated mutations)ZSWIM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM2 (select a term)
intoGenZSWIM2
Cancer3DZSWIM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSWIM2
Genetic Testing Registry ZSWIM2
NextProtQ8NEG5 [Medical]
TSGene151112
GENETestsZSWIM2
Target ValidationZSWIM2
Huge Navigator ZSWIM2 [HugePedia]
snp3D : Map Gene to Disease151112
BioCentury BCIQZSWIM2
ClinGenZSWIM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151112
Chemical/Pharm GKB GenePA134900131
Clinical trialZSWIM2
Miscellaneous
canSAR (ICR)ZSWIM2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM2
EVEXZSWIM2
GoPubMedZSWIM2
iHOPZSWIM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:34 CEST 2017

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