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ZSWIM3 (zinc finger SWIM-type containing 3)

Identity

Alias (NCBI)C20orf164
PPP1R174
HGNC (Hugo) ZSWIM3
HGNC Alias symbdJ337O18.7
PPP1R174
HGNC Alias nameprotein phosphatase 1, regulatory subunit 174
HGNC Previous nameC20orf164
HGNC Previous namechromosome 20 open reading frame 164
LocusID (NCBI) 140831
Atlas_Id 76507
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45857614 and ends at 45879121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF335 (20q13.12) / ZSWIM3 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZSWIM3   16157
Cards
Entrez_Gene (NCBI)ZSWIM3    zinc finger SWIM-type containing 3
AliasesC20orf164; PPP1R174
GeneCards (Weizmann)ZSWIM3
Ensembl hg19 (Hinxton)ENSG00000132801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132801 [Gene_View]  ENSG00000132801 [Sequence]  chr20:45857614-45879121 [Contig_View]  ZSWIM3 [Vega]
ICGC DataPortalENSG00000132801
TCGA cBioPortalZSWIM3
AceView (NCBI)ZSWIM3
Genatlas (Paris)ZSWIM3
SOURCE (Princeton)ZSWIM3
Genetics Home Reference (NIH)ZSWIM3
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM3  -     chr20:45857614-45879121 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM3  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathZSWIM3 - 20q13.12 [CytoView hg19]  ZSWIM3 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000132801
Genome Data Viewer NCBIZSWIM3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056641 AK302767 AK316214 BC027611 BX385024
RefSeq transcript (Entrez)NM_080752
Consensus coding sequences : CCDS (NCBI)ZSWIM3
Gene ExpressionZSWIM3 [ NCBI-GEO ]   ZSWIM3 [ EBI - ARRAY_EXPRESS ]   ZSWIM3 [ SEEK ]   ZSWIM3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM3 [ Firebrowse - Broad ]
GenevisibleExpression of ZSWIM3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140831
GTEX Portal (Tissue expression)ZSWIM3
Human Protein AtlasENSG00000132801-ZSWIM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MP5
PhosPhoSitePlusQ96MP5
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_PMZ    Znf_SWIM    ZSWIM3   
Domain families : Pfam (Sanger)SWIM (PF04434)   
Domain families : Pfam (NCBI)pfam04434   
Domain families : Smart (EMBL)ZnF_PMZ (SM00575)  
Conserved Domain (NCBI)ZSWIM3
SuperfamilyQ96MP5
AlphaFold pdb e-kbQ96MP5   
Human Protein Atlas [tissue]ENSG00000132801-ZSWIM3 [tissue]
HPRD15903
Protein Interaction databases
DIP (DOE-UCLA)Q96MP5
IntAct (EBI)Q96MP5
BioGRIDZSWIM3
STRING (EMBL)ZSWIM3
ZODIACZSWIM3
Ontologies - Pathways
QuickGOQ96MP5
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkZSWIM3
Atlas of Cancer Signalling NetworkZSWIM3
Wikipedia pathwaysZSWIM3
Orthology - Evolution
OrthoDB140831
GeneTree (enSembl)ENSG00000132801
Phylogenetic Trees/Animal Genes : TreeFamZSWIM3
Homologs : HomoloGeneZSWIM3
Homology/Alignments : Family Browser (UCSC)ZSWIM3
Gene fusions - Rearrangements
Fusion : QuiverZSWIM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM3
dbVarZSWIM3
ClinVarZSWIM3
MonarchZSWIM3
1000_GenomesZSWIM3 
Exome Variant ServerZSWIM3
GNOMAD BrowserENSG00000132801
Varsome BrowserZSWIM3
ACMGZSWIM3 variants
VarityQ96MP5
Genomic Variants (DGV)ZSWIM3 [DGVbeta]
DECIPHERZSWIM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM3 
Mutations
ICGC Data PortalZSWIM3 
TCGA Data PortalZSWIM3 
Broad Tumor PortalZSWIM3
OASIS PortalZSWIM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZSWIM3
Mutations and Diseases : HGMDZSWIM3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZSWIM3
DgiDB (Drug Gene Interaction Database)ZSWIM3
DoCM (Curated mutations)ZSWIM3
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM3
Cancer3DZSWIM3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSWIM3
MedgenZSWIM3
Genetic Testing Registry ZSWIM3
NextProtQ96MP5 [Medical]
GENETestsZSWIM3
Target ValidationZSWIM3
Huge Navigator ZSWIM3 [HugePedia]
ClinGenZSWIM3
Clinical trials, drugs, therapy
MyCancerGenomeZSWIM3
Protein Interactions : CTDZSWIM3
Pharm GKB GenePA25706
PharosQ96MP5
Clinical trialZSWIM3
Miscellaneous
canSAR (ICR)ZSWIM3
HarmonizomeZSWIM3
DataMed IndexZSWIM3
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZSWIM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:49 CEST 2021

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