Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZSWIM3 (zinc finger SWIM-type containing 3)

Identity

Alias_namesC20orf164
chromosome 20 open reading frame 164
Alias_symbol (synonym)dJ337O18.7
PPP1R174
Other alias
HGNC (Hugo) ZSWIM3
LocusID (NCBI) 140831
Atlas_Id 76507
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45857581 and ends at 45879130 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF335 (20q13.12) / ZSWIM3 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSWIM3   16157
Cards
Entrez_Gene (NCBI)ZSWIM3  140831  zinc finger SWIM-type containing 3
AliasesC20orf164; PPP1R174
GeneCards (Weizmann)ZSWIM3
Ensembl hg19 (Hinxton)ENSG00000132801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132801 [Gene_View]  chr20:45857581-45879130 [Contig_View]  ZSWIM3 [Vega]
ICGC DataPortalENSG00000132801
TCGA cBioPortalZSWIM3
AceView (NCBI)ZSWIM3
Genatlas (Paris)ZSWIM3
WikiGenes140831
SOURCE (Princeton)ZSWIM3
Genetics Home Reference (NIH)ZSWIM3
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM3  -     chr20:45857581-45879130 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM3  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblZSWIM3 - 20q13.12 [CytoView hg19]  ZSWIM3 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIZSWIM3 [Mapview hg19]  ZSWIM3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056641 AK302767 AK316214 BC027611 BX385024
RefSeq transcript (Entrez)NM_080752
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSWIM3
Cluster EST : UnigeneHs.292135 [ NCBI ]
CGAP (NCI)Hs.292135
Alternative Splicing GalleryENSG00000132801
Gene ExpressionZSWIM3 [ NCBI-GEO ]   ZSWIM3 [ EBI - ARRAY_EXPRESS ]   ZSWIM3 [ SEEK ]   ZSWIM3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140831
GTEX Portal (Tissue expression)ZSWIM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MP5
Splice isoforms : SwissVarQ96MP5
PhosPhoSitePlusQ96MP5
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_PMZ    Znf_SWIM   
Domain families : Pfam (Sanger)SWIM (PF04434)   
Domain families : Pfam (NCBI)pfam04434   
Domain families : Smart (EMBL)ZnF_PMZ (SM00575)  
Conserved Domain (NCBI)ZSWIM3
DMDM Disease mutations140831
Blocks (Seattle)ZSWIM3
SuperfamilyQ96MP5
Human Protein AtlasENSG00000132801
Peptide AtlasQ96MP5
HPRD15903
IPIIPI00102268   IPI00908457   
Protein Interaction databases
DIP (DOE-UCLA)Q96MP5
IntAct (EBI)Q96MP5
FunCoupENSG00000132801
BioGRIDZSWIM3
STRING (EMBL)ZSWIM3
ZODIACZSWIM3
Ontologies - Pathways
QuickGOQ96MP5
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkZSWIM3
Atlas of Cancer Signalling NetworkZSWIM3
Wikipedia pathwaysZSWIM3
Orthology - Evolution
OrthoDB140831
GeneTree (enSembl)ENSG00000132801
Phylogenetic Trees/Animal Genes : TreeFamZSWIM3
HOVERGENQ96MP5
HOGENOMQ96MP5
Homologs : HomoloGeneZSWIM3
Homology/Alignments : Family Browser (UCSC)ZSWIM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM3
dbVarZSWIM3
ClinVarZSWIM3
1000_GenomesZSWIM3 
Exome Variant ServerZSWIM3
ExAC (Exome Aggregation Consortium)ZSWIM3 (select the gene name)
Genetic variants : HAPMAP140831
Genomic Variants (DGV)ZSWIM3 [DGVbeta]
DECIPHERZSWIM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM3 
Mutations
ICGC Data PortalZSWIM3 
TCGA Data PortalZSWIM3 
Broad Tumor PortalZSWIM3
OASIS PortalZSWIM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM3
DgiDB (Drug Gene Interaction Database)ZSWIM3
DoCM (Curated mutations)ZSWIM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM3 (select a term)
intoGenZSWIM3
Cancer3DZSWIM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSWIM3
Genetic Testing Registry ZSWIM3
NextProtQ96MP5 [Medical]
TSGene140831
GENETestsZSWIM3
Target ValidationZSWIM3
Huge Navigator ZSWIM3 [HugePedia]
snp3D : Map Gene to Disease140831
BioCentury BCIQZSWIM3
ClinGenZSWIM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140831
Chemical/Pharm GKB GenePA25706
Clinical trialZSWIM3
Miscellaneous
canSAR (ICR)ZSWIM3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM3
EVEXZSWIM3
GoPubMedZSWIM3
iHOPZSWIM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:51:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.