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ZSWIM4 (zinc finger SWIM-type containing 4)

Identity

Alias_symbol (synonym)FLJ12221
Other alias-
HGNC (Hugo) ZSWIM4
LocusID (NCBI) 65249
Atlas_Id 54821
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 13795460 and ends at 13832230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF699 (19p13.2) / ZSWIM4 (19p13.13)ZSWIM4 (19p13.13) / CCDC130 (19p13.2)ZSWIM4 (19p13.13) / FN3KRP (17q25.3)
ZSWIM4 (19p13.13) / MSMO1 (4q32.3)ZSWIM4 (19p13.13) / NDUFS4 (5q11.2)ZSWIM4 (19p13.13) / PLCB1 (20p12.3)
ZSWIM4 (19p13.13) / RFX1 (19p13.12)ZSWIM4 (19p13.13) / SLC1A6 (19p13.12)ZSWIM4 (19p13.13) / UBQLN4 (1q22)
ZNF699 19p13.2 / ZSWIM4 19p13.13ZSWIM4 19p13.13 / CCDC130 19p13.2ZSWIM4 19p13.13 / SLC1A6 19p13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSWIM4   25704
Cards
Entrez_Gene (NCBI)ZSWIM4  65249  zinc finger SWIM-type containing 4
Aliases
GeneCards (Weizmann)ZSWIM4
Ensembl hg19 (Hinxton)ENSG00000132003 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132003 [Gene_View]  chr19:13795460-13832230 [Contig_View]  ZSWIM4 [Vega]
ICGC DataPortalENSG00000132003
TCGA cBioPortalZSWIM4
AceView (NCBI)ZSWIM4
Genatlas (Paris)ZSWIM4
WikiGenes65249
SOURCE (Princeton)ZSWIM4
Genetics Home Reference (NIH)ZSWIM4
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM4  -     chr19:13795460-13832230 +  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM4  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblZSWIM4 - 19p13.13 [CytoView hg19]  ZSWIM4 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBIZSWIM4 [Mapview hg19]  ZSWIM4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022283 AK024452 AK299057 BG764264
RefSeq transcript (Entrez)NM_023072
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSWIM4
Cluster EST : UnigeneHs.466015 [ NCBI ]
CGAP (NCI)Hs.466015
Alternative Splicing GalleryENSG00000132003
Gene ExpressionZSWIM4 [ NCBI-GEO ]   ZSWIM4 [ EBI - ARRAY_EXPRESS ]   ZSWIM4 [ SEEK ]   ZSWIM4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65249
GTEX Portal (Tissue expression)ZSWIM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7M6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7M6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7M6
Splice isoforms : SwissVarQ9H7M6
PhosPhoSitePlusQ9H7M6
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSWIM4
DMDM Disease mutations65249
Blocks (Seattle)ZSWIM4
SuperfamilyQ9H7M6
Human Protein AtlasENSG00000132003
Peptide AtlasQ9H7M6
HPRD15904
IPIIPI00303331   IPI00644135   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7M6
IntAct (EBI)Q9H7M6
FunCoupENSG00000132003
BioGRIDZSWIM4
STRING (EMBL)ZSWIM4
ZODIACZSWIM4
Ontologies - Pathways
QuickGOQ9H7M6
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkZSWIM4
Atlas of Cancer Signalling NetworkZSWIM4
Wikipedia pathwaysZSWIM4
Orthology - Evolution
OrthoDB65249
GeneTree (enSembl)ENSG00000132003
Phylogenetic Trees/Animal Genes : TreeFamZSWIM4
HOVERGENQ9H7M6
HOGENOMQ9H7M6
Homologs : HomoloGeneZSWIM4
Homology/Alignments : Family Browser (UCSC)ZSWIM4
Gene fusions - Rearrangements
Fusion : MitelmanZNF699/ZSWIM4 [19p13.2/19p13.13]  [t(19;19)(p13;p13)]  
Fusion : MitelmanZSWIM4/CCDC130 [19p13.13/19p13.2]  [t(19;19)(p13;p13)]  
Fusion : MitelmanZSWIM4/SLC1A6 [19p13.13/19p13.12]  [t(19;19)(p13;p13)]  
Fusion : MitelmanZSWIM4/UBQLN4 [19p13.13/1q22]  [t(1;19)(q22;p13)]  
Fusion: TCGAZNF699 19p13.2 ZSWIM4 19p13.13 BRCA
Fusion: TCGAZSWIM4 19p13.13 CCDC130 19p13.2 LUAD
Fusion: TCGAZSWIM4 19p13.13 SLC1A6 19p13.12 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM4
dbVarZSWIM4
ClinVarZSWIM4
1000_GenomesZSWIM4 
Exome Variant ServerZSWIM4
ExAC (Exome Aggregation Consortium)ZSWIM4 (select the gene name)
Genetic variants : HAPMAP65249
Genomic Variants (DGV)ZSWIM4 [DGVbeta]
DECIPHERZSWIM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM4 
Mutations
ICGC Data PortalZSWIM4 
TCGA Data PortalZSWIM4 
Broad Tumor PortalZSWIM4
OASIS PortalZSWIM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM4
DgiDB (Drug Gene Interaction Database)ZSWIM4
DoCM (Curated mutations)ZSWIM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM4 (select a term)
intoGenZSWIM4
Cancer3DZSWIM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSWIM4
Genetic Testing Registry ZSWIM4
NextProtQ9H7M6 [Medical]
TSGene65249
GENETestsZSWIM4
Target ValidationZSWIM4
Huge Navigator ZSWIM4 [HugePedia]
snp3D : Map Gene to Disease65249
BioCentury BCIQZSWIM4
ClinGenZSWIM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65249
Chemical/Pharm GKB GenePA134975055
Clinical trialZSWIM4
Miscellaneous
canSAR (ICR)ZSWIM4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM4
EVEXZSWIM4
GoPubMedZSWIM4
iHOPZSWIM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:40 CEST 2017

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