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ZSWIM5 (zinc finger SWIM-type containing 5)

Identity

Alias_symbol (synonym)KIAA1511
Other alias-
HGNC (Hugo) ZSWIM5
LocusID (NCBI) 57643
Atlas_Id 76508
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 45016404 and ends at 45206578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATPAF2 (17p11.2) / ZSWIM5 (1p34.1)PIK3R3 (1p34.1) / ZSWIM5 (1p34.1)PLEKHM2 (1p36.21) / ZSWIM5 (1p34.1)
RERE (1p36.23) / ZSWIM5 (1p34.1)PLEKHM2 ZSWIM5RERE ZSWIM5
PIK3R3 ZSWIM5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSWIM5   29299
Cards
Entrez_Gene (NCBI)ZSWIM5  57643  zinc finger SWIM-type containing 5
Aliases
GeneCards (Weizmann)ZSWIM5
Ensembl hg19 (Hinxton)ENSG00000162415 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162415 [Gene_View]  chr1:45016404-45206578 [Contig_View]  ZSWIM5 [Vega]
ICGC DataPortalENSG00000162415
TCGA cBioPortalZSWIM5
AceView (NCBI)ZSWIM5
Genatlas (Paris)ZSWIM5
WikiGenes57643
SOURCE (Princeton)ZSWIM5
Genetics Home Reference (NIH)ZSWIM5
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM5  -     chr1:45016404-45206578 -  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM5  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblZSWIM5 - 1p34.1 [CytoView hg19]  ZSWIM5 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIZSWIM5 [Mapview hg19]  ZSWIM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040944 BC013836 BM711793 CN429257
RefSeq transcript (Entrez)NM_020883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSWIM5
Cluster EST : UnigeneHs.656613 [ NCBI ]
CGAP (NCI)Hs.656613
Alternative Splicing GalleryENSG00000162415
Gene ExpressionZSWIM5 [ NCBI-GEO ]   ZSWIM5 [ EBI - ARRAY_EXPRESS ]   ZSWIM5 [ SEEK ]   ZSWIM5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57643
GTEX Portal (Tissue expression)ZSWIM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P217   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P217  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P217
Splice isoforms : SwissVarQ9P217
PhosPhoSitePlusQ9P217
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSWIM5
DMDM Disease mutations57643
Blocks (Seattle)ZSWIM5
SuperfamilyQ9P217
Human Protein AtlasENSG00000162415
Peptide AtlasQ9P217
IPIIPI00853196   
Protein Interaction databases
DIP (DOE-UCLA)Q9P217
IntAct (EBI)Q9P217
FunCoupENSG00000162415
BioGRIDZSWIM5
STRING (EMBL)ZSWIM5
ZODIACZSWIM5
Ontologies - Pathways
QuickGOQ9P217
Ontology : AmiGOextracellular space  zinc ion binding  
Ontology : EGO-EBIextracellular space  zinc ion binding  
NDEx NetworkZSWIM5
Atlas of Cancer Signalling NetworkZSWIM5
Wikipedia pathwaysZSWIM5
Orthology - Evolution
OrthoDB57643
GeneTree (enSembl)ENSG00000162415
Phylogenetic Trees/Animal Genes : TreeFamZSWIM5
HOVERGENQ9P217
HOGENOMQ9P217
Homologs : HomoloGeneZSWIM5
Homology/Alignments : Family Browser (UCSC)ZSWIM5
Gene fusions - Rearrangements
Fusion: TCGAPLEKHM2 ZSWIM5
Fusion: TCGARERE ZSWIM5
Fusion: TCGAPIK3R3 ZSWIM5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM5
dbVarZSWIM5
ClinVarZSWIM5
1000_GenomesZSWIM5 
Exome Variant ServerZSWIM5
ExAC (Exome Aggregation Consortium)ZSWIM5 (select the gene name)
Genetic variants : HAPMAP57643
Genomic Variants (DGV)ZSWIM5 [DGVbeta]
DECIPHERZSWIM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM5 
Mutations
ICGC Data PortalZSWIM5 
TCGA Data PortalZSWIM5 
Broad Tumor PortalZSWIM5
OASIS PortalZSWIM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM5
DgiDB (Drug Gene Interaction Database)ZSWIM5
DoCM (Curated mutations)ZSWIM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM5 (select a term)
intoGenZSWIM5
Cancer3DZSWIM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSWIM5
Genetic Testing Registry ZSWIM5
NextProtQ9P217 [Medical]
TSGene57643
GENETestsZSWIM5
Target ValidationZSWIM5
Huge Navigator ZSWIM5 [HugePedia]
snp3D : Map Gene to Disease57643
BioCentury BCIQZSWIM5
ClinGenZSWIM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57643
Chemical/Pharm GKB GenePA134981647
Clinical trialZSWIM5
Miscellaneous
canSAR (ICR)ZSWIM5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM5
EVEXZSWIM5
GoPubMedZSWIM5
iHOPZSWIM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:35 CEST 2017

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