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ZSWIM6 (zinc finger, SWIM-type containing 6)

Identity

Alias_symbol (synonym)KIAA1577
Other aliasAFND
HGNC (Hugo) ZSWIM6
LocusID (NCBI) 57688
Atlas_Id 76509
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 60628100 and ends at 60841999 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GRSF1 (4q13.3) / ZSWIM6 (5q12.1)PCDH7 (4p15.1) / ZSWIM6 (5q12.1)ZSWIM6 (5q12.1) / ERP29 (12q24.13)
ZSWIM6 (5q12.1) / GATAD2B (1q21.3)ZSWIM6 (5q12.1) / ZSWIM6 (5q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSWIM6   29316
Cards
Entrez_Gene (NCBI)ZSWIM6  57688  zinc finger, SWIM-type containing 6
AliasesAFND
GeneCards (Weizmann)ZSWIM6
Ensembl hg19 (Hinxton)ENSG00000130449 [Gene_View]  chr5:60628100-60841999 [Contig_View]  ZSWIM6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130449 [Gene_View]  chr5:60628100-60841999 [Contig_View]  ZSWIM6 [Vega]
ICGC DataPortalENSG00000130449
TCGA cBioPortalZSWIM6
AceView (NCBI)ZSWIM6
Genatlas (Paris)ZSWIM6
WikiGenes57688
SOURCE (Princeton)ZSWIM6
Genetics Home Reference (NIH)ZSWIM6
Genomic and cartography
GoldenPath hg19 (UCSC)ZSWIM6  -     chr5:60628100-60841999 +  5q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZSWIM6  -     5q12.1   [Description]    (hg38-Dec_2013)
EnsemblZSWIM6 - 5q12.1 [CytoView hg19]  ZSWIM6 - 5q12.1 [CytoView hg38]
Mapping of homologs : NCBIZSWIM6 [Mapview hg19]  ZSWIM6 [Mapview hg38]
OMIM603671   615951   
Gene and transcription
Genbank (Entrez)AA740254 AB046797 AW136453 BC039438 BF750632
RefSeq transcript (Entrez)NM_020928
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)ZSWIM6
Cluster EST : UnigeneHs.744939 [ NCBI ]
CGAP (NCI)Hs.744939
Alternative Splicing GalleryENSG00000130449
Gene ExpressionZSWIM6 [ NCBI-GEO ]   ZSWIM6 [ EBI - ARRAY_EXPRESS ]   ZSWIM6 [ SEEK ]   ZSWIM6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57688
GTEX Portal (Tissue expression)ZSWIM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCJ5
Splice isoforms : SwissVarQ9HCJ5
PhosPhoSitePlusQ9HCJ5
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSWIM6
DMDM Disease mutations57688
Blocks (Seattle)ZSWIM6
SuperfamilyQ9HCJ5
Human Protein AtlasENSG00000130449
Peptide AtlasQ9HCJ5
IPIIPI00787106   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCJ5
IntAct (EBI)Q9HCJ5
FunCoupENSG00000130449
BioGRIDZSWIM6
STRING (EMBL)ZSWIM6
ZODIACZSWIM6
Ontologies - Pathways
QuickGOQ9HCJ5
Ontology : AmiGOzinc ion binding  neuron projection morphogenesis  regulation of neuron migration  
Ontology : EGO-EBIzinc ion binding  neuron projection morphogenesis  regulation of neuron migration  
NDEx NetworkZSWIM6
Atlas of Cancer Signalling NetworkZSWIM6
Wikipedia pathwaysZSWIM6
Orthology - Evolution
OrthoDB57688
GeneTree (enSembl)ENSG00000130449
Phylogenetic Trees/Animal Genes : TreeFamZSWIM6
HOVERGENQ9HCJ5
HOGENOMQ9HCJ5
Homologs : HomoloGeneZSWIM6
Homology/Alignments : Family Browser (UCSC)ZSWIM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM6
dbVarZSWIM6
ClinVarZSWIM6
1000_GenomesZSWIM6 
Exome Variant ServerZSWIM6
ExAC (Exome Aggregation Consortium)ZSWIM6 (select the gene name)
Genetic variants : HAPMAP57688
Genomic Variants (DGV)ZSWIM6 [DGVbeta]
DECIPHER (Syndromes)5:60628100-60841999  ENSG00000130449
CONAN: Copy Number AnalysisZSWIM6 
Mutations
ICGC Data PortalZSWIM6 
TCGA Data PortalZSWIM6 
Broad Tumor PortalZSWIM6
OASIS PortalZSWIM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM6
DgiDB (Drug Gene Interaction Database)ZSWIM6
DoCM (Curated mutations)ZSWIM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM6 (select a term)
intoGenZSWIM6
Cancer3DZSWIM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603671    615951   
Orphanet3060   
MedgenZSWIM6
Genetic Testing Registry ZSWIM6
NextProtQ9HCJ5 [Medical]
TSGene57688
GENETestsZSWIM6
Huge Navigator ZSWIM6 [HugePedia]
snp3D : Map Gene to Disease57688
BioCentury BCIQZSWIM6
ClinGenZSWIM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57688
Chemical/Pharm GKB GenePA134910181
Clinical trialZSWIM6
Miscellaneous
canSAR (ICR)ZSWIM6 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM6
EVEXZSWIM6
GoPubMedZSWIM6
iHOPZSWIM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:16 CET 2017

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