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ZSWIM6 (zinc finger SWIM-type containing 6)

Identity

Alias (NCBI)AFND
NEDMAGA
HGNC (Hugo) ZSWIM6
HGNC Alias symbKIAA1577
LocusID (NCBI) 57688
Atlas_Id 76509
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 61332258 and ends at 61546172 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GRSF1 (4q13.3) / ZSWIM6 (5q12.1)PCDH7 (4p15.1) / ZSWIM6 (5q12.1)ZSWIM6 (5q12.1) / ERP29 (12q24.13)
ZSWIM6 (5q12.1) / GATAD2B (1q21.3)ZSWIM6 (5q12.1) / ZSWIM6 (5q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZSWIM6   29316
Cards
Entrez_Gene (NCBI)ZSWIM6    zinc finger SWIM-type containing 6
AliasesAFND; NEDMAGA
GeneCards (Weizmann)ZSWIM6
Ensembl hg19 (Hinxton)ENSG00000130449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130449 [Gene_View]  ENSG00000130449 [Sequence]  chr5:61332258-61546172 [Contig_View]  ZSWIM6 [Vega]
ICGC DataPortalENSG00000130449
TCGA cBioPortalZSWIM6
AceView (NCBI)ZSWIM6
Genatlas (Paris)ZSWIM6
SOURCE (Princeton)ZSWIM6
Genetics Home Reference (NIH)ZSWIM6
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM6  -     chr5:61332258-61546172 +  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM6  -     5q12.1   [Description]    (hg19-Feb_2009)
GoldenPathZSWIM6 - 5q12.1 [CytoView hg19]  ZSWIM6 - 5q12.1 [CytoView hg38]
ImmunoBaseENSG00000130449
Genome Data Viewer NCBIZSWIM6 [Mapview hg19]  
OMIM603671   615951   617865   
Gene and transcription
Genbank (Entrez)AA740254 AB046797 AW136453 BC039438 BF750632
RefSeq transcript (Entrez)NM_020928
Consensus coding sequences : CCDS (NCBI)ZSWIM6
Gene ExpressionZSWIM6 [ NCBI-GEO ]   ZSWIM6 [ EBI - ARRAY_EXPRESS ]   ZSWIM6 [ SEEK ]   ZSWIM6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM6 [ Firebrowse - Broad ]
GenevisibleExpression of ZSWIM6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57688
GTEX Portal (Tissue expression)ZSWIM6
Human Protein AtlasENSG00000130449-ZSWIM6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCJ5
PhosPhoSitePlusQ9HCJ5
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSWIM6
SuperfamilyQ9HCJ5
AlphaFold pdb e-kbQ9HCJ5   
Human Protein Atlas [tissue]ENSG00000130449-ZSWIM6 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9HCJ5
IntAct (EBI)Q9HCJ5
BioGRIDZSWIM6
STRING (EMBL)ZSWIM6
ZODIACZSWIM6
Ontologies - Pathways
QuickGOQ9HCJ5
Ontology : AmiGOzinc ion binding  striatal medium spiny neuron differentiation  Cul2-RING ubiquitin ligase complex  regulation of axon guidance  
Ontology : EGO-EBIzinc ion binding  striatal medium spiny neuron differentiation  Cul2-RING ubiquitin ligase complex  regulation of axon guidance  
NDEx NetworkZSWIM6
Atlas of Cancer Signalling NetworkZSWIM6
Wikipedia pathwaysZSWIM6
Orthology - Evolution
OrthoDB57688
GeneTree (enSembl)ENSG00000130449
Phylogenetic Trees/Animal Genes : TreeFamZSWIM6
Homologs : HomoloGeneZSWIM6
Homology/Alignments : Family Browser (UCSC)ZSWIM6
Gene fusions - Rearrangements
Fusion : QuiverZSWIM6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM6
dbVarZSWIM6
ClinVarZSWIM6
MonarchZSWIM6
1000_GenomesZSWIM6 
Exome Variant ServerZSWIM6
GNOMAD BrowserENSG00000130449
Varsome BrowserZSWIM6
ACMGZSWIM6 variants
VarityQ9HCJ5
Genomic Variants (DGV)ZSWIM6 [DGVbeta]
DECIPHERZSWIM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM6 
Mutations
ICGC Data PortalZSWIM6 
TCGA Data PortalZSWIM6 
Broad Tumor PortalZSWIM6
OASIS PortalZSWIM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZSWIM6
Mutations and Diseases : HGMDZSWIM6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZSWIM6
DgiDB (Drug Gene Interaction Database)ZSWIM6
DoCM (Curated mutations)ZSWIM6
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM6
Cancer3DZSWIM6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603671    615951    617865   
Orphanet3060   
DisGeNETZSWIM6
MedgenZSWIM6
Genetic Testing Registry ZSWIM6
NextProtQ9HCJ5 [Medical]
GENETestsZSWIM6
Target ValidationZSWIM6
Huge Navigator ZSWIM6 [HugePedia]
ClinGenZSWIM6
Clinical trials, drugs, therapy
MyCancerGenomeZSWIM6
Protein Interactions : CTDZSWIM6
Pharm GKB GenePA134910181
PharosQ9HCJ5
Clinical trialZSWIM6
Miscellaneous
canSAR (ICR)ZSWIM6
HarmonizomeZSWIM6
DataMed IndexZSWIM6
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZSWIM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:50 CEST 2021

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