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ZSWIM7 (zinc finger SWIM-type containing 7)

Identity

Alias_symbol (synonym)SWS1
Other alias
HGNC (Hugo) ZSWIM7
LocusID (NCBI) 125150
Atlas_Id 50269
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15879875 and ends at 15903006 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLK3 (15q24.1) / ZSWIM7 (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSWIM7   26993
Cards
Entrez_Gene (NCBI)ZSWIM7  125150  zinc finger SWIM-type containing 7
AliasesSWS1
GeneCards (Weizmann)ZSWIM7
Ensembl hg19 (Hinxton)ENSG00000214941 [Gene_View]  chr17:15879875-15903006 [Contig_View]  ZSWIM7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214941 [Gene_View]  chr17:15879875-15903006 [Contig_View]  ZSWIM7 [Vega]
ICGC DataPortalENSG00000214941
TCGA cBioPortalZSWIM7
AceView (NCBI)ZSWIM7
Genatlas (Paris)ZSWIM7
WikiGenes125150
SOURCE (Princeton)ZSWIM7
Genetics Home Reference (NIH)ZSWIM7
Genomic and cartography
GoldenPath hg19 (UCSC)ZSWIM7  -     chr17:15879875-15903006 -  17p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZSWIM7  -     17p12   [Description]    (hg38-Dec_2013)
EnsemblZSWIM7 - 17p12 [CytoView hg19]  ZSWIM7 - 17p12 [CytoView hg38]
Mapping of homologs : NCBIZSWIM7 [Mapview hg19]  ZSWIM7 [Mapview hg38]
OMIM614535   
Gene and transcription
Genbank (Entrez)AK093384 BC018807 BC044842 BC066344 BC089386
RefSeq transcript (Entrez)NM_001042697 NM_001042698
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)ZSWIM7
Cluster EST : UnigeneHs.593985 [ NCBI ]
CGAP (NCI)Hs.593985
Alternative Splicing GalleryENSG00000214941
Gene ExpressionZSWIM7 [ NCBI-GEO ]   ZSWIM7 [ EBI - ARRAY_EXPRESS ]   ZSWIM7 [ SEEK ]   ZSWIM7 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125150
GTEX Portal (Tissue expression)ZSWIM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ19AV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ19AV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ19AV6
Splice isoforms : SwissVarQ19AV6
PhosPhoSitePlusQ19AV6
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)SWIM (PF04434)   
Domain families : Pfam (NCBI)pfam04434   
Conserved Domain (NCBI)ZSWIM7
DMDM Disease mutations125150
Blocks (Seattle)ZSWIM7
SuperfamilyQ19AV6
Human Protein AtlasENSG00000214941
Peptide AtlasQ19AV6
IPIIPI00760741   
Protein Interaction databases
DIP (DOE-UCLA)Q19AV6
IntAct (EBI)Q19AV6
FunCoupENSG00000214941
BioGRIDZSWIM7
STRING (EMBL)ZSWIM7
ZODIACZSWIM7
Ontologies - Pathways
QuickGOQ19AV6
Ontology : AmiGOdouble-strand break repair via homologous recombination  protein binding  nucleus  zinc ion binding  protein stabilization  Shu complex  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  protein binding  nucleus  zinc ion binding  protein stabilization  Shu complex  
NDEx NetworkZSWIM7
Atlas of Cancer Signalling NetworkZSWIM7
Wikipedia pathwaysZSWIM7
Orthology - Evolution
OrthoDB125150
GeneTree (enSembl)ENSG00000214941
Phylogenetic Trees/Animal Genes : TreeFamZSWIM7
HOVERGENQ19AV6
HOGENOMQ19AV6
Homologs : HomoloGeneZSWIM7
Homology/Alignments : Family Browser (UCSC)ZSWIM7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM7
dbVarZSWIM7
ClinVarZSWIM7
1000_GenomesZSWIM7 
Exome Variant ServerZSWIM7
ExAC (Exome Aggregation Consortium)ZSWIM7 (select the gene name)
Genetic variants : HAPMAP125150
Genomic Variants (DGV)ZSWIM7 [DGVbeta]
DECIPHER (Syndromes)17:15879875-15903006  ENSG00000214941
CONAN: Copy Number AnalysisZSWIM7 
Mutations
ICGC Data PortalZSWIM7 
TCGA Data PortalZSWIM7 
Broad Tumor PortalZSWIM7
OASIS PortalZSWIM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM7
DgiDB (Drug Gene Interaction Database)ZSWIM7
DoCM (Curated mutations)ZSWIM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM7 (select a term)
intoGenZSWIM7
Cancer3DZSWIM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614535   
Orphanet
MedgenZSWIM7
Genetic Testing Registry ZSWIM7
NextProtQ19AV6 [Medical]
TSGene125150
GENETestsZSWIM7
Huge Navigator ZSWIM7 [HugePedia]
snp3D : Map Gene to Disease125150
BioCentury BCIQZSWIM7
ClinGenZSWIM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125150
Chemical/Pharm GKB GenePA162411055
Clinical trialZSWIM7
Miscellaneous
canSAR (ICR)ZSWIM7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM7
EVEXZSWIM7
GoPubMedZSWIM7
iHOPZSWIM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:59 CEST 2017

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