Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZSWIM8 (zinc finger SWIM-type containing 8)

Identity

Alias (NCBI)KIAA0913
HGNC (Hugo) ZSWIM8
HGNC Alias symb4832404P21Rik
HGNC Previous nameKIAA0913
HGNC Previous nameKIAA0913
LocusID (NCBI) 23053
Atlas_Id 76510
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73785624 and ends at 73801798 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NDST2 (10q22.2) / ZSWIM8 (10q22.2)VCL (10q22.2) / ZSWIM8 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)ZSWIM8   23528
Cards
Entrez_Gene (NCBI)ZSWIM8    zinc finger SWIM-type containing 8
AliasesKIAA0913
GeneCards (Weizmann)ZSWIM8
Ensembl hg19 (Hinxton)ENSG00000214655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214655 [Gene_View]  ENSG00000214655 [Sequence]  chr10:73785624-73801798 [Contig_View]  ZSWIM8 [Vega]
ICGC DataPortalENSG00000214655
TCGA cBioPortalZSWIM8
AceView (NCBI)ZSWIM8
Genatlas (Paris)ZSWIM8
SOURCE (Princeton)ZSWIM8
Genetics Home Reference (NIH)ZSWIM8
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM8  -     chr10:73785624-73801798 +  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM8  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathZSWIM8 - 10q22.2 [CytoView hg19]  ZSWIM8 - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000214655
Genome Data Viewer NCBIZSWIM8 [Mapview hg19]  
OMIM619213   
Gene and transcription
Genbank (Entrez)AB020720 AK023742 AK091621 AK309136 AL133662
RefSeq transcript (Entrez)NM_001242487 NM_001242488 NM_001367799 NM_015037
Consensus coding sequences : CCDS (NCBI)ZSWIM8
Gene ExpressionZSWIM8 [ NCBI-GEO ]   ZSWIM8 [ EBI - ARRAY_EXPRESS ]   ZSWIM8 [ SEEK ]   ZSWIM8 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM8 [ Firebrowse - Broad ]
GenevisibleExpression of ZSWIM8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23053
GTEX Portal (Tissue expression)ZSWIM8
Human Protein AtlasENSG00000214655-ZSWIM8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA7E2V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA7E2V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA7E2V4
PhosPhoSitePlusA7E2V4
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSWIM8
SuperfamilyA7E2V4
AlphaFold pdb e-kbA7E2V4   
Human Protein Atlas [tissue]ENSG00000214655-ZSWIM8 [tissue]
HPRD17199
Protein Interaction databases
DIP (DOE-UCLA)A7E2V4
IntAct (EBI)A7E2V4
BioGRIDZSWIM8
STRING (EMBL)ZSWIM8
ZODIACZSWIM8
Ontologies - Pathways
QuickGOA7E2V4
Ontology : AmiGOcytosol  zinc ion binding  protein ubiquitination  protein ubiquitination  Cul2-RING ubiquitin ligase complex  Cul3-RING ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of axon guidance  ubiquitin ligase-substrate adaptor activity  positive regulation of miRNA catabolic process  
Ontology : EGO-EBIcytosol  zinc ion binding  protein ubiquitination  protein ubiquitination  Cul2-RING ubiquitin ligase complex  Cul3-RING ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of axon guidance  ubiquitin ligase-substrate adaptor activity  positive regulation of miRNA catabolic process  
NDEx NetworkZSWIM8
Atlas of Cancer Signalling NetworkZSWIM8
Wikipedia pathwaysZSWIM8
Orthology - Evolution
OrthoDB23053
GeneTree (enSembl)ENSG00000214655
Phylogenetic Trees/Animal Genes : TreeFamZSWIM8
Homologs : HomoloGeneZSWIM8
Homology/Alignments : Family Browser (UCSC)ZSWIM8
Gene fusions - Rearrangements
Fusion : QuiverZSWIM8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM8
dbVarZSWIM8
ClinVarZSWIM8
MonarchZSWIM8
1000_GenomesZSWIM8 
Exome Variant ServerZSWIM8
GNOMAD BrowserENSG00000214655
Varsome BrowserZSWIM8
ACMGZSWIM8 variants
VarityA7E2V4
Genomic Variants (DGV)ZSWIM8 [DGVbeta]
DECIPHERZSWIM8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM8 
Mutations
ICGC Data PortalZSWIM8 
TCGA Data PortalZSWIM8 
Broad Tumor PortalZSWIM8
OASIS PortalZSWIM8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZSWIM8
Mutations and Diseases : HGMDZSWIM8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZSWIM8
DgiDB (Drug Gene Interaction Database)ZSWIM8
DoCM (Curated mutations)ZSWIM8
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM8
Cancer3DZSWIM8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619213   
Orphanet
DisGeNETZSWIM8
MedgenZSWIM8
Genetic Testing Registry ZSWIM8
NextProtA7E2V4 [Medical]
GENETestsZSWIM8
Target ValidationZSWIM8
Huge Navigator ZSWIM8 [HugePedia]
ClinGenZSWIM8
Clinical trials, drugs, therapy
MyCancerGenomeZSWIM8
Protein Interactions : CTDZSWIM8
Pharm GKB GenePA134885317
PharosA7E2V4
Clinical trialZSWIM8
Miscellaneous
canSAR (ICR)ZSWIM8
HarmonizomeZSWIM8
DataMed IndexZSWIM8
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZSWIM8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:50 CEST 2021
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