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ZSWIM8 (zinc finger SWIM-type containing 8)

Identity

Alias_namesKIAA0913
KIAA0913
Alias_symbol (synonym)4832404P21Rik
Other alias
HGNC (Hugo) ZSWIM8
LocusID (NCBI) 23053
Atlas_Id 76510
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73785624 and ends at 73801798 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NDST2 (10q22.2) / ZSWIM8 (10q22.2)VCL (10q22.2) / ZSWIM8 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(10;10)(q22;q22) NDST2/ZSWIM8
t(10;10)(q22;q22) VCL/ZSWIM8

External links

Nomenclature
HGNC (Hugo)ZSWIM8   23528
Cards
Entrez_Gene (NCBI)ZSWIM8  23053  zinc finger SWIM-type containing 8
AliasesKIAA0913
GeneCards (Weizmann)ZSWIM8
Ensembl hg19 (Hinxton)ENSG00000214655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214655 [Gene_View]  ENSG00000214655 [Sequence]  chr10:73785624-73801798 [Contig_View]  ZSWIM8 [Vega]
ICGC DataPortalENSG00000214655
TCGA cBioPortalZSWIM8
AceView (NCBI)ZSWIM8
Genatlas (Paris)ZSWIM8
WikiGenes23053
SOURCE (Princeton)ZSWIM8
Genetics Home Reference (NIH)ZSWIM8
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM8  -     chr10:73785624-73801798 +  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM8  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblZSWIM8 - 10q22.2 [CytoView hg19]  ZSWIM8 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIZSWIM8 [Mapview hg19]  ZSWIM8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB020720 AK023742 AK091621 AK309136 AL133662
RefSeq transcript (Entrez)NM_001242487 NM_001242488 NM_015037
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSWIM8
Cluster EST : UnigeneHs.65135 [ NCBI ]
CGAP (NCI)Hs.65135
Alternative Splicing GalleryENSG00000214655
Gene ExpressionZSWIM8 [ NCBI-GEO ]   ZSWIM8 [ EBI - ARRAY_EXPRESS ]   ZSWIM8 [ SEEK ]   ZSWIM8 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23053
GTEX Portal (Tissue expression)ZSWIM8
Human Protein AtlasENSG00000214655-ZSWIM8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA7E2V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA7E2V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA7E2V4
Splice isoforms : SwissVarA7E2V4
PhosPhoSitePlusA7E2V4
Domaine pattern : Prosite (Expaxy)ZF_SWIM (PS50966)   
Domains : Interpro (EBI)Znf_SWIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSWIM8
DMDM Disease mutations23053
Blocks (Seattle)ZSWIM8
SuperfamilyA7E2V4
Human Protein Atlas [tissue]ENSG00000214655-ZSWIM8 [tissue]
Peptide AtlasA7E2V4
HPRD17199
IPIIPI00877130   IPI00876920   IPI00876841   IPI00877106   IPI00876976   IPI00166606   IPI00641512   IPI00943803   IPI01014934   IPI01010622   IPI00877039   
Protein Interaction databases
DIP (DOE-UCLA)A7E2V4
IntAct (EBI)A7E2V4
FunCoupENSG00000214655
BioGRIDZSWIM8
STRING (EMBL)ZSWIM8
ZODIACZSWIM8
Ontologies - Pathways
QuickGOA7E2V4
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkZSWIM8
Atlas of Cancer Signalling NetworkZSWIM8
Wikipedia pathwaysZSWIM8
Orthology - Evolution
OrthoDB23053
GeneTree (enSembl)ENSG00000214655
Phylogenetic Trees/Animal Genes : TreeFamZSWIM8
HOVERGENA7E2V4
HOGENOMA7E2V4
Homologs : HomoloGeneZSWIM8
Homology/Alignments : Family Browser (UCSC)ZSWIM8
Gene fusions - Rearrangements
Fusion : QuiverZSWIM8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM8
dbVarZSWIM8
ClinVarZSWIM8
1000_GenomesZSWIM8 
Exome Variant ServerZSWIM8
ExAC (Exome Aggregation Consortium)ENSG00000214655
GNOMAD BrowserENSG00000214655
Varsome BrowserZSWIM8
Genetic variants : HAPMAP23053
Genomic Variants (DGV)ZSWIM8 [DGVbeta]
DECIPHERZSWIM8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM8 
Mutations
ICGC Data PortalZSWIM8 
TCGA Data PortalZSWIM8 
Broad Tumor PortalZSWIM8
OASIS PortalZSWIM8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSWIM8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSWIM8
BioMutasearch ZSWIM8
DgiDB (Drug Gene Interaction Database)ZSWIM8
DoCM (Curated mutations)ZSWIM8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM8 (select a term)
intoGenZSWIM8
Cancer3DZSWIM8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSWIM8
MedgenZSWIM8
Genetic Testing Registry ZSWIM8
NextProtA7E2V4 [Medical]
TSGene23053
GENETestsZSWIM8
Target ValidationZSWIM8
Huge Navigator ZSWIM8 [HugePedia]
snp3D : Map Gene to Disease23053
BioCentury BCIQZSWIM8
ClinGenZSWIM8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23053
Chemical/Pharm GKB GenePA134885317
Clinical trialZSWIM8
Miscellaneous
canSAR (ICR)ZSWIM8 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM8
EVEXZSWIM8
GoPubMedZSWIM8
iHOPZSWIM8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:41:03 CEST 2018
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