Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZSWIM9 (zinc finger SWIM-type containing 9)

Identity

Alias_namesC19orf68
chromosome 19 open reading frame 68
Alias_symbol (synonym)LOC374920
Other alias
HGNC (Hugo) ZSWIM9
LocusID (NCBI) 374920
Atlas_Id 78875
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48170692 and ends at 48197620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZSWIM9   34495
Cards
Entrez_Gene (NCBI)ZSWIM9  374920  zinc finger SWIM-type containing 9
AliasesC19orf68
GeneCards (Weizmann)ZSWIM9
Ensembl hg19 (Hinxton)ENSG00000185453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185453 [Gene_View]  chr19:48170692-48197620 [Contig_View]  ZSWIM9 [Vega]
ICGC DataPortalENSG00000185453
TCGA cBioPortalZSWIM9
AceView (NCBI)ZSWIM9
Genatlas (Paris)ZSWIM9
WikiGenes374920
SOURCE (Princeton)ZSWIM9
Genetics Home Reference (NIH)ZSWIM9
Genomic and cartography
GoldenPath hg38 (UCSC)ZSWIM9  -     chr19:48170692-48197620 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSWIM9  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblZSWIM9 - 19q13.33 [CytoView hg19]  ZSWIM9 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIZSWIM9 [Mapview hg19]  ZSWIM9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043386
RefSeq transcript (Entrez)NM_199341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSWIM9
Cluster EST : UnigeneHs.664054 [ NCBI ]
CGAP (NCI)Hs.664054
Alternative Splicing GalleryENSG00000185453
Gene ExpressionZSWIM9 [ NCBI-GEO ]   ZSWIM9 [ EBI - ARRAY_EXPRESS ]   ZSWIM9 [ SEEK ]   ZSWIM9 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSWIM9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374920
GTEX Portal (Tissue expression)ZSWIM9
Human Protein AtlasENSG00000185453-ZSWIM9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XI8
Splice isoforms : SwissVarQ86XI8
PhosPhoSitePlusQ86XI8
Domains : Interpro (EBI)SINA-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSWIM9
DMDM Disease mutations374920
Blocks (Seattle)ZSWIM9
SuperfamilyQ86XI8
Human Protein Atlas [tissue]ENSG00000185453-ZSWIM9 [tissue]
Peptide AtlasQ86XI8
IPIIPI00793638   
Protein Interaction databases
DIP (DOE-UCLA)Q86XI8
IntAct (EBI)Q86XI8
FunCoupENSG00000185453
BioGRIDZSWIM9
STRING (EMBL)ZSWIM9
ZODIACZSWIM9
Ontologies - Pathways
QuickGOQ86XI8
Ontology : AmiGOprotein binding  nucleus  ubiquitin-dependent protein catabolic process  multicellular organism development  
Ontology : EGO-EBIprotein binding  nucleus  ubiquitin-dependent protein catabolic process  multicellular organism development  
NDEx NetworkZSWIM9
Atlas of Cancer Signalling NetworkZSWIM9
Wikipedia pathwaysZSWIM9
Orthology - Evolution
OrthoDB374920
GeneTree (enSembl)ENSG00000185453
Phylogenetic Trees/Animal Genes : TreeFamZSWIM9
HOVERGENQ86XI8
HOGENOMQ86XI8
Homologs : HomoloGeneZSWIM9
Homology/Alignments : Family Browser (UCSC)ZSWIM9
Gene fusions - Rearrangements
Tumor Fusion PortalZSWIM9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSWIM9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSWIM9
dbVarZSWIM9
ClinVarZSWIM9
1000_GenomesZSWIM9 
Exome Variant ServerZSWIM9
ExAC (Exome Aggregation Consortium)ENSG00000185453
GNOMAD BrowserENSG00000185453
Genetic variants : HAPMAP374920
Genomic Variants (DGV)ZSWIM9 [DGVbeta]
DECIPHERZSWIM9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSWIM9 
Mutations
ICGC Data PortalZSWIM9 
TCGA Data PortalZSWIM9 
Broad Tumor PortalZSWIM9
OASIS PortalZSWIM9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZSWIM9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSWIM9
DgiDB (Drug Gene Interaction Database)ZSWIM9
DoCM (Curated mutations)ZSWIM9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSWIM9 (select a term)
intoGenZSWIM9
Cancer3DZSWIM9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSWIM9
MedgenZSWIM9
Genetic Testing Registry ZSWIM9
NextProtQ86XI8 [Medical]
TSGene374920
GENETestsZSWIM9
Target ValidationZSWIM9
Huge Navigator ZSWIM9 [HugePedia]
snp3D : Map Gene to Disease374920
BioCentury BCIQZSWIM9
ClinGenZSWIM9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374920
Chemical/Pharm GKB GenePA162378847
Clinical trialZSWIM9
Miscellaneous
canSAR (ICR)ZSWIM9 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSWIM9
EVEXZSWIM9
GoPubMedZSWIM9
iHOPZSWIM9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:09 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.