Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZUFSP (zinc finger with UFM1 specific peptidase domain)

Identity

Alias_namesC6orf113
chromosome 6 open reading frame 113
Alias_symbol (synonym)dJ412I7.3
Other alias
HGNC (Hugo) ZUFSP
LocusID (NCBI) 221302
Atlas_Id 76512
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116635618 and ends at 116668810 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM162B (6q22.1) / ZUFSP (6q22.1)LACE1 (6q21) / ZUFSP (6q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZUFSP   21224
Cards
Entrez_Gene (NCBI)ZUFSP  221302  zinc finger with UFM1 specific peptidase domain
AliasesC6orf113; dJ412I7.3
GeneCards (Weizmann)ZUFSP
Ensembl hg19 (Hinxton)ENSG00000153975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153975 [Gene_View]  ENSG00000153975 [Sequence]  chr6:116635618-116668810 [Contig_View]  ZUFSP [Vega]
ICGC DataPortalENSG00000153975
TCGA cBioPortalZUFSP
AceView (NCBI)ZUFSP
Genatlas (Paris)ZUFSP
WikiGenes221302
SOURCE (Princeton)ZUFSP
Genetics Home Reference (NIH)ZUFSP
Genomic and cartography
GoldenPath hg38 (UCSC)ZUFSP  -     chr6:116635618-116668810 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZUFSP  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblZUFSP - 6q22.1 [CytoView hg19]  ZUFSP - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIZUFSP [Mapview hg19]  ZUFSP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054582 AK307523 BC015420 BC016879 BX537872
RefSeq transcript (Entrez)NM_145062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZUFSP
Cluster EST : UnigeneHs.29857 [ NCBI ]
CGAP (NCI)Hs.29857
Alternative Splicing GalleryENSG00000153975
Gene ExpressionZUFSP [ NCBI-GEO ]   ZUFSP [ EBI - ARRAY_EXPRESS ]   ZUFSP [ SEEK ]   ZUFSP [ MEM ]
Gene Expression Viewer (FireBrowse)ZUFSP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221302
GTEX Portal (Tissue expression)ZUFSP
Human Protein AtlasENSG00000153975-ZUFSP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AP4
Splice isoforms : SwissVarQ96AP4
PhosPhoSitePlusQ96AP4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Peptidase_C78_UfSP1/2    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)Peptidase_C78 (PF07910)   
Domain families : Pfam (NCBI)pfam07910   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZUFSP
DMDM Disease mutations221302
Blocks (Seattle)ZUFSP
SuperfamilyQ96AP4
Human Protein Atlas [tissue]ENSG00000153975-ZUFSP [tissue]
Peptide AtlasQ96AP4
HPRD12840
IPIIPI00303160   IPI00761141   IPI00514933   
Protein Interaction databases
DIP (DOE-UCLA)Q96AP4
IntAct (EBI)Q96AP4
FunCoupENSG00000153975
BioGRIDZUFSP
STRING (EMBL)ZUFSP
ZODIACZUFSP
Ontologies - Pathways
QuickGOQ96AP4
Ontology : AmiGOnucleic acid binding  protein binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  protein binding  metal ion binding  
NDEx NetworkZUFSP
Atlas of Cancer Signalling NetworkZUFSP
Wikipedia pathwaysZUFSP
Orthology - Evolution
OrthoDB221302
GeneTree (enSembl)ENSG00000153975
Phylogenetic Trees/Animal Genes : TreeFamZUFSP
HOVERGENQ96AP4
HOGENOMQ96AP4
Homologs : HomoloGeneZUFSP
Homology/Alignments : Family Browser (UCSC)ZUFSP
Gene fusions - Rearrangements
Fusion : QuiverZUFSP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZUFSP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZUFSP
dbVarZUFSP
ClinVarZUFSP
1000_GenomesZUFSP 
Exome Variant ServerZUFSP
ExAC (Exome Aggregation Consortium)ENSG00000153975
GNOMAD BrowserENSG00000153975
Varsome BrowserZUFSP
Genetic variants : HAPMAP221302
Genomic Variants (DGV)ZUFSP [DGVbeta]
DECIPHERZUFSP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZUFSP 
Mutations
ICGC Data PortalZUFSP 
TCGA Data PortalZUFSP 
Broad Tumor PortalZUFSP
OASIS PortalZUFSP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZUFSP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZUFSP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZUFSP
DgiDB (Drug Gene Interaction Database)ZUFSP
DoCM (Curated mutations)ZUFSP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZUFSP (select a term)
intoGenZUFSP
Cancer3DZUFSP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZUFSP
MedgenZUFSP
Genetic Testing Registry ZUFSP
NextProtQ96AP4 [Medical]
TSGene221302
GENETestsZUFSP
Target ValidationZUFSP
Huge Navigator ZUFSP [HugePedia]
snp3D : Map Gene to Disease221302
BioCentury BCIQZUFSP
ClinGenZUFSP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221302
Chemical/Pharm GKB GenePA162411072
Clinical trialZUFSP
Miscellaneous
canSAR (ICR)ZUFSP (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZUFSP
EVEXZUFSP
GoPubMedZUFSP
iHOPZUFSP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:41:04 CEST 2018

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