Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZWINT (ZW10 interacting kinetochore protein)

Identity

Alias_namesZW10 interactor
Alias_symbol (synonym)KNTC2AP
SIP30
Zwint1
Other aliasHZwint-1
ZWINT1
HGNC (Hugo) ZWINT
LocusID (NCBI) 11130
Atlas_Id 43562
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 56357438 and ends at 56361273 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZWINT   13195
Cards
Entrez_Gene (NCBI)ZWINT  11130  ZW10 interacting kinetochore protein
AliasesHZwint-1; KNTC2AP; SIP30; ZWINT1
GeneCards (Weizmann)ZWINT
Ensembl hg19 (Hinxton)ENSG00000122952 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122952 [Gene_View]  ENSG00000122952 [Sequence]  chr10:56357438-56361273 [Contig_View]  ZWINT [Vega]
ICGC DataPortalENSG00000122952
TCGA cBioPortalZWINT
AceView (NCBI)ZWINT
Genatlas (Paris)ZWINT
WikiGenes11130
SOURCE (Princeton)ZWINT
Genetics Home Reference (NIH)ZWINT
Genomic and cartography
GoldenPath hg38 (UCSC)ZWINT  -     chr10:56357438-56361273 -  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZWINT  -     10q21.1   [Description]    (hg19-Feb_2009)
ZWINT - 10q21.1 [CytoView hg19]  ZWINT - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBIZWINT [Mapview hg19]  ZWINT [Mapview hg38]
OMIM609177   
Gene and transcription
Genbank (Entrez)AF067656 AK093808 AK225509 AK293416 AK298148
RefSeq transcript (Entrez)NM_001005413 NM_001005414 NM_007057 NM_032997
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZWINT
Cluster EST : UnigeneHs.591363 [ NCBI ]
CGAP (NCI)Hs.591363
Alternative Splicing GalleryENSG00000122952
Gene ExpressionZWINT [ NCBI-GEO ]   ZWINT [ EBI - ARRAY_EXPRESS ]   ZWINT [ SEEK ]   ZWINT [ MEM ]
Gene Expression Viewer (FireBrowse)ZWINT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11130
GTEX Portal (Tissue expression)ZWINT
Human Protein AtlasENSG00000122952-ZWINT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95229   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95229  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95229
Splice isoforms : SwissVarO95229
PhosPhoSitePlusO95229
Domains : Interpro (EBI)Zwint-1   
Domain families : Pfam (Sanger)Zwint (PF15556)   
Domain families : Pfam (NCBI)pfam15556   
Conserved Domain (NCBI)ZWINT
DMDM Disease mutations11130
Blocks (Seattle)ZWINT
SuperfamilyO95229
Human Protein Atlas [tissue]ENSG00000122952-ZWINT [tissue]
Peptide AtlasO95229
HPRD18366
IPIIPI00294008   IPI00646553   IPI00470591   IPI00643295   
Protein Interaction databases
DIP (DOE-UCLA)O95229
IntAct (EBI)O95229
FunCoupENSG00000122952
BioGRIDZWINT
STRING (EMBL)ZWINT
ZODIACZWINT
Ontologies - Pathways
QuickGOO95229
Ontology : AmiGOmitotic sister chromatid segregation  kinetochore  condensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cytosol  mitotic cell cycle checkpoint  nuclear body  dendrite  protein N-terminus binding  cell division  establishment of localization in cell  
Ontology : EGO-EBImitotic sister chromatid segregation  kinetochore  condensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cytosol  mitotic cell cycle checkpoint  nuclear body  dendrite  protein N-terminus binding  cell division  establishment of localization in cell  
NDEx NetworkZWINT
Atlas of Cancer Signalling NetworkZWINT
Wikipedia pathwaysZWINT
Orthology - Evolution
OrthoDB11130
GeneTree (enSembl)ENSG00000122952
Phylogenetic Trees/Animal Genes : TreeFamZWINT
HOGENOMO95229
Homologs : HomoloGeneZWINT
Homology/Alignments : Family Browser (UCSC)ZWINT
Gene fusions - Rearrangements
Fusion : QuiverZWINT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZWINT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZWINT
dbVarZWINT
ClinVarZWINT
1000_GenomesZWINT 
Exome Variant ServerZWINT
ExAC (Exome Aggregation Consortium)ENSG00000122952
GNOMAD BrowserENSG00000122952
Varsome BrowserZWINT
Genetic variants : HAPMAP11130
Genomic Variants (DGV)ZWINT [DGVbeta]
DECIPHERZWINT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZWINT 
Mutations
ICGC Data PortalZWINT 
TCGA Data PortalZWINT 
Broad Tumor PortalZWINT
OASIS PortalZWINT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZWINT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZWINT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZWINT
DgiDB (Drug Gene Interaction Database)ZWINT
DoCM (Curated mutations)ZWINT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZWINT (select a term)
intoGenZWINT
Cancer3DZWINT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609177   
Orphanet
DisGeNETZWINT
MedgenZWINT
Genetic Testing Registry ZWINT
NextProtO95229 [Medical]
TSGene11130
GENETestsZWINT
Target ValidationZWINT
Huge Navigator ZWINT [HugePedia]
snp3D : Map Gene to Disease11130
BioCentury BCIQZWINT
ClinGenZWINT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11130
Chemical/Pharm GKB GenePA37761
Clinical trialZWINT
Miscellaneous
canSAR (ICR)ZWINT (select the gene name)
DataMed IndexZWINT
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZWINT
EVEXZWINT
GoPubMedZWINT
iHOPZWINT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 21 16:17:28 CET 2019
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