Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZXDA (zinc finger, X-linked, duplicated A)

Identity

Alias_symbol (synonym)ZNF896
Other alias
HGNC (Hugo) ZXDA
LocusID (NCBI) 7789
Atlas_Id 76514
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 57905430 and ends at 57910633 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZXDA   13198
Cards
Entrez_Gene (NCBI)ZXDA  7789  zinc finger, X-linked, duplicated A
AliasesZNF896
GeneCards (Weizmann)ZXDA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:57905430-57910633 [Contig_View]  ZXDA [Vega]
TCGA cBioPortalZXDA
AceView (NCBI)ZXDA
Genatlas (Paris)ZXDA
WikiGenes7789
SOURCE (Princeton)ZXDA
Genetics Home Reference (NIH)ZXDA
Genomic and cartography
GoldenPath hg38 (UCSC)ZXDA  -     chrX:57905430-57910633 -  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZXDA  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblZXDA - Xp11.21 [CytoView hg19]  ZXDA - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBIZXDA [Mapview hg19]  ZXDA [Mapview hg38]
OMIM300235   
Gene and transcription
Genbank (Entrez)AK122815 AK292686 BC059356 EU446736 L14787
RefSeq transcript (Entrez)NM_007156
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZXDA
Cluster EST : UnigeneHs.550094 [ NCBI ]
CGAP (NCI)Hs.550094
Gene ExpressionZXDA [ NCBI-GEO ]   ZXDA [ EBI - ARRAY_EXPRESS ]   ZXDA [ SEEK ]   ZXDA [ MEM ]
Gene Expression Viewer (FireBrowse)ZXDA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7789
GTEX Portal (Tissue expression)ZXDA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98168   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98168  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98168
Splice isoforms : SwissVarP98168
PhosPhoSitePlusP98168
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZXDA
DMDM Disease mutations7789
Blocks (Seattle)ZXDA
SuperfamilyP98168
Peptide AtlasP98168
HPRD02210
IPIIPI00024295   
Protein Interaction databases
DIP (DOE-UCLA)P98168
IntAct (EBI)P98168
BioGRIDZXDA
STRING (EMBL)ZXDA
ZODIACZXDA
Ontologies - Pathways
QuickGOP98168
Ontology : AmiGOnucleic acid binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  C2H2 zinc finger domain binding  
Ontology : EGO-EBInucleic acid binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  C2H2 zinc finger domain binding  
NDEx NetworkZXDA
Atlas of Cancer Signalling NetworkZXDA
Wikipedia pathwaysZXDA
Orthology - Evolution
OrthoDB7789
Phylogenetic Trees/Animal Genes : TreeFamZXDA
HOVERGENP98168
HOGENOMP98168
Homologs : HomoloGeneZXDA
Homology/Alignments : Family Browser (UCSC)ZXDA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZXDA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZXDA
dbVarZXDA
ClinVarZXDA
1000_GenomesZXDA 
Exome Variant ServerZXDA
ExAC (Exome Aggregation Consortium)ZXDA (select the gene name)
Genetic variants : HAPMAP7789
Genomic Variants (DGV)ZXDA [DGVbeta]
DECIPHERZXDA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZXDA 
Mutations
ICGC Data PortalZXDA 
TCGA Data PortalZXDA 
Broad Tumor PortalZXDA
OASIS PortalZXDA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZXDA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZXDA
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZXDA
DgiDB (Drug Gene Interaction Database)ZXDA
DoCM (Curated mutations)ZXDA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZXDA (select a term)
intoGenZXDA
Cancer3DZXDA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300235   
Orphanet
MedgenZXDA
Genetic Testing Registry ZXDA
NextProtP98168 [Medical]
TSGene7789
GENETestsZXDA
Target ValidationZXDA
Huge Navigator ZXDA [HugePedia]
snp3D : Map Gene to Disease7789
BioCentury BCIQZXDA
ClinGenZXDA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7789
Chemical/Pharm GKB GenePA37763
Clinical trialZXDA
Miscellaneous
canSAR (ICR)ZXDA (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZXDA
EVEXZXDA
GoPubMedZXDA
iHOPZXDA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:51:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.