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ZXDB (zinc finger, X-linked, duplicated B)

Identity

Alias_symbol (synonym)ZNF905
Other aliasdJ83L6.1
HGNC (Hugo) ZXDB
LocusID (NCBI) 158586
Atlas_Id 76515
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 57591836 and ends at 57597477 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZXDB   13199
Cards
Entrez_Gene (NCBI)ZXDB  158586  zinc finger, X-linked, duplicated B
AliasesZNF905; dJ83L6.1
GeneCards (Weizmann)ZXDB
Ensembl hg19 (Hinxton)ENSG00000198455 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198455 [Gene_View]  chrX:57591836-57597477 [Contig_View]  ZXDB [Vega]
ICGC DataPortalENSG00000198455
TCGA cBioPortalZXDB
AceView (NCBI)ZXDB
Genatlas (Paris)ZXDB
WikiGenes158586
SOURCE (Princeton)ZXDB
Genetics Home Reference (NIH)ZXDB
Genomic and cartography
GoldenPath hg38 (UCSC)ZXDB  -     chrX:57591836-57597477 +  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZXDB  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblZXDB - Xp11.21 [CytoView hg19]  ZXDB - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBIZXDB [Mapview hg19]  ZXDB [Mapview hg38]
OMIM300236   
Gene and transcription
Genbank (Entrez)AK124513 AK289766 AW150690 BC157078 L14788
RefSeq transcript (Entrez)NM_007157
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZXDB
Cluster EST : UnigeneHs.649423 [ NCBI ]
CGAP (NCI)Hs.649423
Alternative Splicing GalleryENSG00000198455
Gene ExpressionZXDB [ NCBI-GEO ]   ZXDB [ EBI - ARRAY_EXPRESS ]   ZXDB [ SEEK ]   ZXDB [ MEM ]
Gene Expression Viewer (FireBrowse)ZXDB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158586
GTEX Portal (Tissue expression)ZXDB
Human Protein AtlasENSG00000198455-ZXDB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98169   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98169  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98169
Splice isoforms : SwissVarP98169
PhosPhoSitePlusP98169
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZXDB
DMDM Disease mutations158586
Blocks (Seattle)ZXDB
SuperfamilyP98169
Human Protein Atlas [tissue]ENSG00000198455-ZXDB [tissue]
Peptide AtlasP98169
HPRD11777
IPIIPI00024297   IPI00784287   
Protein Interaction databases
DIP (DOE-UCLA)P98169
IntAct (EBI)P98169
FunCoupENSG00000198455
BioGRIDZXDB
STRING (EMBL)ZXDB
ZODIACZXDB
Ontologies - Pathways
QuickGOP98169
Ontology : AmiGOmolecular_function  nucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  nucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZXDB
Atlas of Cancer Signalling NetworkZXDB
Wikipedia pathwaysZXDB
Orthology - Evolution
OrthoDB158586
GeneTree (enSembl)ENSG00000198455
Phylogenetic Trees/Animal Genes : TreeFamZXDB
HOVERGENP98169
HOGENOMP98169
Homologs : HomoloGeneZXDB
Homology/Alignments : Family Browser (UCSC)ZXDB
Gene fusions - Rearrangements
Tumor Fusion PortalZXDB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZXDB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZXDB
dbVarZXDB
ClinVarZXDB
1000_GenomesZXDB 
Exome Variant ServerZXDB
ExAC (Exome Aggregation Consortium)ENSG00000198455
GNOMAD BrowserENSG00000198455
Genetic variants : HAPMAP158586
Genomic Variants (DGV)ZXDB [DGVbeta]
DECIPHERZXDB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZXDB 
Mutations
ICGC Data PortalZXDB 
TCGA Data PortalZXDB 
Broad Tumor PortalZXDB
OASIS PortalZXDB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZXDB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZXDB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZXDB
DgiDB (Drug Gene Interaction Database)ZXDB
DoCM (Curated mutations)ZXDB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZXDB (select a term)
intoGenZXDB
Cancer3DZXDB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300236   
Orphanet
DisGeNETZXDB
MedgenZXDB
Genetic Testing Registry ZXDB
NextProtP98169 [Medical]
TSGene158586
GENETestsZXDB
Target ValidationZXDB
Huge Navigator ZXDB [HugePedia]
snp3D : Map Gene to Disease158586
BioCentury BCIQZXDB
ClinGenZXDB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158586
Chemical/Pharm GKB GenePA37764
Clinical trialZXDB
Miscellaneous
canSAR (ICR)ZXDB (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZXDB
EVEXZXDB
GoPubMedZXDB
iHOPZXDB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:00 CET 2017

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