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ZXDC (ZXD family zinc finger C)

Identity

Alias_symbol (synonym)MGC11349
FLJ13861
Other aliasZXDL
HGNC (Hugo) ZXDC
LocusID (NCBI) 79364
Atlas_Id 76516
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 126458901 and ends at 126475919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CYB5D1 (17p13.1) / ZXDC (3q21.3)NDRG3 (20q11.23) / ZXDC (3q21.3)ZXDC (3q21.3) / ZXDC (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZXDC   28160
Cards
Entrez_Gene (NCBI)ZXDC  79364  ZXD family zinc finger C
AliasesZXDL
GeneCards (Weizmann)ZXDC
Ensembl hg19 (Hinxton)ENSG00000070476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000070476 [Gene_View]  chr3:126458901-126475919 [Contig_View]  ZXDC [Vega]
ICGC DataPortalENSG00000070476
TCGA cBioPortalZXDC
AceView (NCBI)ZXDC
Genatlas (Paris)ZXDC
WikiGenes79364
SOURCE (Princeton)ZXDC
Genetics Home Reference (NIH)ZXDC
Genomic and cartography
GoldenPath hg38 (UCSC)ZXDC  -     chr3:126458901-126475919 -  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZXDC  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblZXDC - 3q21.3 [CytoView hg19]  ZXDC - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIZXDC [Mapview hg19]  ZXDC [Mapview hg38]
OMIM615746   
Gene and transcription
Genbank (Entrez)AF131763 AK023923 AK092101 AK093796 AK095149
RefSeq transcript (Entrez)NM_001040653 NM_025112
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZXDC
Cluster EST : UnigeneHs.711046 [ NCBI ]
CGAP (NCI)Hs.711046
Alternative Splicing GalleryENSG00000070476
Gene ExpressionZXDC [ NCBI-GEO ]   ZXDC [ EBI - ARRAY_EXPRESS ]   ZXDC [ SEEK ]   ZXDC [ MEM ]
Gene Expression Viewer (FireBrowse)ZXDC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79364
GTEX Portal (Tissue expression)ZXDC
Human Protein AtlasENSG00000070476-ZXDC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2QGD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2QGD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2QGD7
Splice isoforms : SwissVarQ2QGD7
PhosPhoSitePlusQ2QGD7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZXDC
DMDM Disease mutations79364
Blocks (Seattle)ZXDC
SuperfamilyQ2QGD7
Human Protein Atlas [tissue]ENSG00000070476-ZXDC [tissue]
Peptide AtlasQ2QGD7
HPRD14420
IPIIPI00397977   IPI00759470   IPI00432711   IPI00966331   
Protein Interaction databases
DIP (DOE-UCLA)Q2QGD7
IntAct (EBI)Q2QGD7
FunCoupENSG00000070476
BioGRIDZXDC
STRING (EMBL)ZXDC
ZODIACZXDC
Ontologies - Pathways
QuickGOQ2QGD7
Ontology : AmiGOnucleic acid binding  transcription factor activity, sequence-specific DNA binding  protein binding  cellular_component  nucleus  transcription, DNA-templated  LRR domain binding  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  C2H2 zinc finger domain binding  
Ontology : EGO-EBInucleic acid binding  transcription factor activity, sequence-specific DNA binding  protein binding  cellular_component  nucleus  transcription, DNA-templated  LRR domain binding  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  C2H2 zinc finger domain binding  
NDEx NetworkZXDC
Atlas of Cancer Signalling NetworkZXDC
Wikipedia pathwaysZXDC
Orthology - Evolution
OrthoDB79364
GeneTree (enSembl)ENSG00000070476
Phylogenetic Trees/Animal Genes : TreeFamZXDC
HOVERGENQ2QGD7
HOGENOMQ2QGD7
Homologs : HomoloGeneZXDC
Homology/Alignments : Family Browser (UCSC)ZXDC
Gene fusions - Rearrangements
Tumor Fusion PortalZXDC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZXDC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZXDC
dbVarZXDC
ClinVarZXDC
1000_GenomesZXDC 
Exome Variant ServerZXDC
ExAC (Exome Aggregation Consortium)ENSG00000070476
GNOMAD BrowserENSG00000070476
Genetic variants : HAPMAP79364
Genomic Variants (DGV)ZXDC [DGVbeta]
DECIPHERZXDC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZXDC 
Mutations
ICGC Data PortalZXDC 
TCGA Data PortalZXDC 
Broad Tumor PortalZXDC
OASIS PortalZXDC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZXDC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZXDC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZXDC
DgiDB (Drug Gene Interaction Database)ZXDC
DoCM (Curated mutations)ZXDC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZXDC (select a term)
intoGenZXDC
Cancer3DZXDC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615746   
Orphanet
DisGeNETZXDC
MedgenZXDC
Genetic Testing Registry ZXDC
NextProtQ2QGD7 [Medical]
TSGene79364
GENETestsZXDC
Target ValidationZXDC
Huge Navigator ZXDC [HugePedia]
snp3D : Map Gene to Disease79364
BioCentury BCIQZXDC
ClinGenZXDC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79364
Chemical/Pharm GKB GenePA142670466
Clinical trialZXDC
Miscellaneous
canSAR (ICR)ZXDC (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZXDC
EVEXZXDC
GoPubMedZXDC
iHOPZXDC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:09:32 CET 2017

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