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ZYG11B (zyg-11 family member B, cell cycle regulator)

Identity

Alias_namesZYG11
zyg-11 homolog (C. elegans)
zyg-11 homolog B (C. elegans)
Alias_symbol (synonym)FLJ13456
Other alias
HGNC (Hugo) ZYG11B
LocusID (NCBI) 79699
Atlas_Id 76518
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52726459 and ends at 52827341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MYO9A (15q23) / ZYG11B (1p32.3)ZNF793 (19q13.12) / ZYG11B (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZYG11B   25820
Cards
Entrez_Gene (NCBI)ZYG11B  79699  zyg-11 family member B, cell cycle regulator
AliasesZYG11
GeneCards (Weizmann)ZYG11B
Ensembl hg19 (Hinxton)ENSG00000162378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162378 [Gene_View]  chr1:52726459-52827341 [Contig_View]  ZYG11B [Vega]
ICGC DataPortalENSG00000162378
TCGA cBioPortalZYG11B
AceView (NCBI)ZYG11B
Genatlas (Paris)ZYG11B
WikiGenes79699
SOURCE (Princeton)ZYG11B
Genetics Home Reference (NIH)ZYG11B
Genomic and cartography
GoldenPath hg38 (UCSC)ZYG11B  -     chr1:52726459-52827341 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZYG11B  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblZYG11B - 1p32.3 [CytoView hg19]  ZYG11B - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIZYG11B [Mapview hg19]  ZYG11B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051517 AK023518 AK025056 AK056645 AK095643
RefSeq transcript (Entrez)NM_024646
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZYG11B
Cluster EST : UnigeneHs.476280 [ NCBI ]
CGAP (NCI)Hs.476280
Alternative Splicing GalleryENSG00000162378
Gene ExpressionZYG11B [ NCBI-GEO ]   ZYG11B [ EBI - ARRAY_EXPRESS ]   ZYG11B [ SEEK ]   ZYG11B [ MEM ]
Gene Expression Viewer (FireBrowse)ZYG11B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79699
GTEX Portal (Tissue expression)ZYG11B
Human Protein AtlasENSG00000162378-ZYG11B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0D3
Splice isoforms : SwissVarQ9C0D3
PhosPhoSitePlusQ9C0D3
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZYG11B
DMDM Disease mutations79699
Blocks (Seattle)ZYG11B
SuperfamilyQ9C0D3
Human Protein Atlas [tissue]ENSG00000162378-ZYG11B [tissue]
Peptide AtlasQ9C0D3
HPRD13356
IPIIPI00155199   IPI01009936   IPI00867680   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0D3
IntAct (EBI)Q9C0D3
FunCoupENSG00000162378
BioGRIDZYG11B
STRING (EMBL)ZYG11B
ZODIACZYG11B
Ontologies - Pathways
QuickGOQ9C0D3
Ontology : AmiGOubiquitin-protein transferase activity  protein ubiquitination  Cul2-RING ubiquitin ligase complex  regulation of ubiquitin-protein transferase activity  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein ubiquitination  Cul2-RING ubiquitin ligase complex  regulation of ubiquitin-protein transferase activity  
NDEx NetworkZYG11B
Atlas of Cancer Signalling NetworkZYG11B
Wikipedia pathwaysZYG11B
Orthology - Evolution
OrthoDB79699
GeneTree (enSembl)ENSG00000162378
Phylogenetic Trees/Animal Genes : TreeFamZYG11B
HOVERGENQ9C0D3
HOGENOMQ9C0D3
Homologs : HomoloGeneZYG11B
Homology/Alignments : Family Browser (UCSC)ZYG11B
Gene fusions - Rearrangements
Fusion: Tumor Portal ZYG11B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZYG11B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZYG11B
dbVarZYG11B
ClinVarZYG11B
1000_GenomesZYG11B 
Exome Variant ServerZYG11B
ExAC (Exome Aggregation Consortium)ENSG00000162378
GNOMAD BrowserENSG00000162378
Genetic variants : HAPMAP79699
Genomic Variants (DGV)ZYG11B [DGVbeta]
DECIPHERZYG11B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZYG11B 
Mutations
ICGC Data PortalZYG11B 
TCGA Data PortalZYG11B 
Broad Tumor PortalZYG11B
OASIS PortalZYG11B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZYG11B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZYG11B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZYG11B
DgiDB (Drug Gene Interaction Database)ZYG11B
DoCM (Curated mutations)ZYG11B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZYG11B (select a term)
intoGenZYG11B
Cancer3DZYG11B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZYG11B
Genetic Testing Registry ZYG11B
NextProtQ9C0D3 [Medical]
TSGene79699
GENETestsZYG11B
Target ValidationZYG11B
Huge Navigator ZYG11B [HugePedia]
snp3D : Map Gene to Disease79699
BioCentury BCIQZYG11B
ClinGenZYG11B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79699
Chemical/Pharm GKB GenePA142670468
Clinical trialZYG11B
Miscellaneous
canSAR (ICR)ZYG11B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZYG11B
EVEXZYG11B
GoPubMedZYG11B
iHOPZYG11B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:20 CET 2017

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