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ZZZ3 (zinc finger, ZZ-type containing 3)

Identity

Alias_symbol (synonym)DKFZP564I052
ATAC1
Other alias
HGNC (Hugo) ZZZ3
LocusID (NCBI) 26009
Atlas_Id 76520
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78028101 and ends at 78149112 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDYL (6p25.1) / ZZZ3 (1p31.1)LYZ (12q15) / ZZZ3 (1p31.1)ZZZ3 (1p31.1) / ARF4 (3p14.3)
ZZZ3 (1p31.1) / CXCL11 (4q21.1)ZZZ3 (1p31.1) / MCL1 (1q21.3)ZZZ3 (1p31.1) / NCK1 (3q22.3)
ZZZ3 (1p31.1) / PTPRB (12q15)ZZZ3 (1p31.1) / RAD51B (14q24.1)ZZZ3 (1p31.1) / ZZZ3 (1p31.1)
ZZZ3 NCK1ZZZ3 CXCL11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZZZ3   24523
Cards
Entrez_Gene (NCBI)ZZZ3  26009  zinc finger, ZZ-type containing 3
AliasesATAC1
GeneCards (Weizmann)ZZZ3
Ensembl hg19 (Hinxton)ENSG00000036549 [Gene_View]  chr1:78028101-78149112 [Contig_View]  ZZZ3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000036549 [Gene_View]  chr1:78028101-78149112 [Contig_View]  ZZZ3 [Vega]
ICGC DataPortalENSG00000036549
TCGA cBioPortalZZZ3
AceView (NCBI)ZZZ3
Genatlas (Paris)ZZZ3
WikiGenes26009
SOURCE (Princeton)ZZZ3
Genetics Home Reference (NIH)ZZZ3
Genomic and cartography
GoldenPath hg19 (UCSC)ZZZ3  -     chr1:78028101-78149112 -  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZZZ3  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblZZZ3 - 1p31.1 [CytoView hg19]  ZZZ3 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIZZZ3 [Mapview hg19]  ZZZ3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001224 AK074119 AK310514 AL080063 BC035079
RefSeq transcript (Entrez)NM_001308237 NM_015534
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ZZZ3
Cluster EST : UnigeneHs.480506 [ NCBI ]
CGAP (NCI)Hs.480506
Alternative Splicing GalleryENSG00000036549
Gene ExpressionZZZ3 [ NCBI-GEO ]   ZZZ3 [ EBI - ARRAY_EXPRESS ]   ZZZ3 [ SEEK ]   ZZZ3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZZZ3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26009
GTEX Portal (Tissue expression)ZZZ3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYH5
Splice isoforms : SwissVarQ8IYH5
PhosPhoSitePlusQ8IYH5
Domaine pattern : Prosite (Expaxy)HTH_MYB (PS51294)    ZF_ZZ_1 (PS01357)    ZF_ZZ_2 (PS50135)   
Domains : Interpro (EBI)Homeodomain-like    Myb_dom    SANT/Myb    Znf_ZZ   
Domain families : Pfam (Sanger)Myb_DNA-binding (PF00249)    ZZ (PF00569)   
Domain families : Pfam (NCBI)pfam00249    pfam00569   
Domain families : Smart (EMBL)SANT (SM00717)  ZnF_ZZ (SM00291)  
Conserved Domain (NCBI)ZZZ3
DMDM Disease mutations26009
Blocks (Seattle)ZZZ3
PDB (SRS)2FC7    2YUM   
PDB (PDBSum)2FC7    2YUM   
PDB (IMB)2FC7    2YUM   
PDB (RSDB)2FC7    2YUM   
Structural Biology KnowledgeBase2FC7    2YUM   
SCOP (Structural Classification of Proteins)2FC7    2YUM   
CATH (Classification of proteins structures)2FC7    2YUM   
SuperfamilyQ8IYH5
Human Protein AtlasENSG00000036549
Peptide AtlasQ8IYH5
HPRD15907
IPIIPI00217773   IPI00845511   IPI00647531   IPI00845256   IPI00952847   IPI01015675   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYH5
IntAct (EBI)Q8IYH5
FunCoupENSG00000036549
BioGRIDZZZ3
STRING (EMBL)ZZZ3
ZODIACZZZ3
Ontologies - Pathways
QuickGOQ8IYH5
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleus  Ada2/Gcn5/Ada3 transcription activator complex  nucleolus  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  nuclear membrane  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleus  Ada2/Gcn5/Ada3 transcription activator complex  nucleolus  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  nuclear membrane  
NDEx NetworkZZZ3
Atlas of Cancer Signalling NetworkZZZ3
Wikipedia pathwaysZZZ3
Orthology - Evolution
OrthoDB26009
GeneTree (enSembl)ENSG00000036549
Phylogenetic Trees/Animal Genes : TreeFamZZZ3
HOVERGENQ8IYH5
HOGENOMQ8IYH5
Homologs : HomoloGeneZZZ3
Homology/Alignments : Family Browser (UCSC)ZZZ3
Gene fusions - Rearrangements
Fusion: TCGAZZZ3 NCK1
Fusion: TCGAZZZ3 CXCL11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZZZ3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZZZ3
dbVarZZZ3
ClinVarZZZ3
1000_GenomesZZZ3 
Exome Variant ServerZZZ3
ExAC (Exome Aggregation Consortium)ZZZ3 (select the gene name)
Genetic variants : HAPMAP26009
Genomic Variants (DGV)ZZZ3 [DGVbeta]
DECIPHER (Syndromes)1:78028101-78149112  ENSG00000036549
CONAN: Copy Number AnalysisZZZ3 
Mutations
ICGC Data PortalZZZ3 
TCGA Data PortalZZZ3 
Broad Tumor PortalZZZ3
OASIS PortalZZZ3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZZZ3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZZZ3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZZZ3
DgiDB (Drug Gene Interaction Database)ZZZ3
DoCM (Curated mutations)ZZZ3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZZZ3 (select a term)
intoGenZZZ3
Cancer3DZZZ3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZZZ3
Genetic Testing Registry ZZZ3
NextProtQ8IYH5 [Medical]
TSGene26009
GENETestsZZZ3
Huge Navigator ZZZ3 [HugePedia]
snp3D : Map Gene to Disease26009
BioCentury BCIQZZZ3
ClinGenZZZ3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26009
Chemical/Pharm GKB GenePA134873184
Clinical trialZZZ3
Miscellaneous
canSAR (ICR)ZZZ3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZZZ3
EVEXZZZ3
GoPubMedZZZ3
iHOPZZZ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:54:17 CET 2017

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