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HOXA11 (homeobox A11)

Identity

Other namesHOX1I (HOMEOBOX 1I)
HGNC (Hugo) HOXA11
Location 7p15-7p14.2
Location_base_pair Starts at 27220777 and ends at 27224835 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
Description spans a 3,7 kb genomic region containing 2 exons
Transcription mRNA 2295 bp

Protein

 
  homeobox containing protein with C terminal localisation of the homedomain. N terminal several repeat regions: 1: Poly-Ser; 2: Poly-Arg; 3 :Poly-Ala; 4: Poly-Gly; 5: Poly-Ala.
Description 313 amino acids, 34.5 kDa, contains a homeodomain with helix-turn-helix (HTH) motif. The HTH motif consists of approximately 20 residues and is characterised by 2 alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix of the HTH motif binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA. The first helix helps to stabilise the structure.
Expression in lung, bone, uterus, placenta, testis, prostate, liver, hematopoietic precursor cells, endometrium
Localisation nucleus
Function Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. HOXA11 is involved in the regulation of uterine development and is required for female fertility. Expression of HOXA11 is detected at all differentiation stages of normal T cells in the thymus, suggesting a role in normal T cell development.
Homology homolog to murine Hox-1.9; ABD-B homeobox family

Mutations

Germinal Mutation of HOXA11 in radio-ulnar synostosis with amegakaryotic thrombocytopenia; autosomal dominant inheritance; 1-bp deletion in exon 2 of the HOXA11 gene. Deletion of an adenine converted AAC (asparagine) to ACA (threonine), resulting in a premature termination codon and truncation of the remaining 22 amino acids of the HOXA11 protein.

Implicated in

Entity inv(7)(p15q34), t(7;7)(p15;q34)
Disease T-cell acute lymphoblastic leukemia
Cytogenetics inv(7)(p15q34) or t(7;7)(p15;q34) places 5'HOXA cluster genes (7p15) under the influence of strong enhancers within the TCRB locus (7q34) resulting in ectopic expression of especially HOXA10 and HOXA11
Abnormal Protein no fusion protein but ectopic expression of HOXA10 and HOXA11
  
Entity t(7;11)(p15;p15)
Disease CML, only once reported
Prognosis unknown
Cytogenetics this rearrangement fuses the 5' NUP98 gene in frame to the 3' HOXA11 gene generation a chimeric fusion transcript
Hybrid/Mutated Gene 5' NUP98-3'HOXA11
  

External links

Nomenclature
HGNC (Hugo)HOXA11   5101
Entrez_Gene (NCBI)HOXA11  3207  homeobox A11
Cards
AtlasHOXA11ID40847ch7p15
GeneCards (Weizmann)HOXA11
Ensembl (Hinxton)ENSG00000005073 [Gene_View]  HOXA11 [Vega]
AceView (NCBI)HOXA11
Genatlas (Paris)HOXA11
euGene (Indiana)3207
SOURCE (Stanford)NM_005523
Gene Expression (Array Express) ENSG00000005073
Genomic and cartography
GoldenPath (UCSC)HOXA11  -     chr7:27220777-27224835 -  7p15-p14   [Description]    (hg19-Feb_2009)
EnsemblHOXA11 - 7p15-p14 [CytoView]
Mapping of homologs : NCBIHOXA11 [Mapview]
OMIM142958   605432   
Gene and transcription
Gene : Genbank (Entrez)AK313921 AL551705 BC033706 BC040948 CR611111
Reference sequence (RefSeq transcript) :SRSNM_005523
Reference transcript : EntrezNM_005523
RefSeq genomic : SRSAC_000050 AC_000068 AC_000139 NC_000007 NG_012079 NT_007819 NT_079592 NW_001839003 NW_923240
RefSeq genomic : EntrezAC_000050 AC_000068 AC_000139 NC_000007 NG_012079 NT_007819 NT_079592 NW_001839003 NW_923240
Consensus coding sequences : CCDS NCBIHOXA11
Cluster EST : UnigeneHs.249171 [ SRS ] Hs.249171 [ NCBI ]
Alternative Splicing : Fast-db (Paris)3207
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP31270 (SRS) P31270 (Expasy) P31270 (Uniprot)
With graphics : InterProP31270
Splice isoforms : VarSplice FASTAP31270(VarSplice FASTA)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domain pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)DUF3528    Homeobox    Homeobox_CS    Homeobox_region    Homeodomain-like    Homeodomain-rel   
Domains : Interpro (EBI)DUF3528    Homeobox    Homeobox_CS    Homeobox_region    Homeodomain-like    Homeodomain-rel   
Related proteins : CluSTrP31270
Domain families : Pfam SRSDUF3528 (PF12045)    Homeobox (PF00046)   
Domain families : Pfam SangerDUF3528 (PF12045)    Homeobox (PF00046)   
Domain families : Pfam NCBIpfam12045    pfam00046   
Domain families : Smart EMBLHOX (SM00389)  
Blocks (Seattle)P31270
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
Human Protein AtlasENSG00000005073
HPRD00846
Protein Interaction databases
DIP (DOE-UCLA)P31270
IntAct (EBI)P31270
FunCoupENSG00000005073
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIHOXA11
SNP : GeneSNP UtahHOXA11
SNP : HGBaseHOXA11
Genetic variants : HAPMAPHOXA11
Cancer Gene: CensusHOXA11 
Somatic Mutations in Cancer : COSMICHOXA11 
Translocation Breakpoints in Cancer : TICdbHOXA11 
Mutations and Diseases : HGMDHOXA11
Hereditary diseases : OMIM142958    605432   
Hereditary diseases : GENETests142958    605432   
Diseases : Genetic AssociationHOXA11
General knowledge
Homologs : HomoloGeneHOXA11
Homology/Alignments : Family Browser UCSCHOXA11
Phylogenetic Trees/Animal Genes : TreeFamHOXA11
Chemical/Protein Interactions : CTD3207
Keywords Ontology : AmiGOskeletal system development  metanephros development  branching involved in ureteric bud morphogenesis  induction of an organ  transcription factor activity  protein binding  nucleus  transcription factor complex  regulation of transcription, DNA-dependent  multicellular organismal development  anatomical structure morphogenesis  anterior/posterior pattern formation  dorsal/ventral pattern formation  proximal/distal pattern formation  positive regulation of cell development  positive regulation of chondrocyte differentiation  embryonic digit morphogenesis  sequence-specific DNA binding  developmental growth  cartilage development involved in endochondral bone morphogenesis  
Keywords Ontology : EGO-EBIskeletal system development  metanephros development  branching involved in ureteric bud morphogenesis  induction of an organ  transcription factor activity  protein binding  nucleus  transcription factor complex  regulation of transcription, DNA-dependent  multicellular organismal development  anatomical structure morphogenesis  anterior/posterior pattern formation  dorsal/ventral pattern formation  proximal/distal pattern formation  positive regulation of cell development  positive regulation of chondrocyte differentiation  embryonic digit morphogenesis  sequence-specific DNA binding  developmental growth  cartilage development involved in endochondral bone morphogenesis  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesHOXA11 Related clones (RZPD - Berlin)
Literature
PubMed35 Pubmed reference(s) in Entrez
PubGeneHOXA11

Bibliography

Homeotic transformations and limb defects in Hox A11 mutant mice.
Small KM, Potter SS
Genes & development. 1993 ; 7 (12A) : 2318-2328.
PMID 7902826
 
Absence of radius and ulna in mice lacking hoxa-11 and hoxd-11.
Davis AP, Witte DP, Hsieh-Li HM, Potter SS, Capecchi MR
Nature. 1995 ; 375 (6534) : 791-795.
PMID 7596412
 
Hoxa 11 structure, extensive antisense transcription, and function in male and female fertility.
Hsieh-Li HM, Witte DP, Weinstein M, Branford W, Li H, Small K, Potter SS
Development (Cambridge, England). 1995 ; 121 (5) : 1373-1385.
PMID 7789268
 
Abnormal uterine stromal and glandular function associated with maternal reproductive defects in Hoxa-11 null mice.
Gendron RL, Paradis H, Hsieh-Li HM, Lee DW, Potter SS, Markoff E
Biology of reproduction. 1997 ; 56 (5) : 1097-1105.
PMID 9160706
 
Characterization of Hoxa-10/Hoxa-11 transheterozygotes reveals functional redundancy and regulatory interactions.
Branford WW, Benson GV, Ma L, Maas RL, Potter SS
Developmental biology. 2000 ; 224 (2) : 373-387.
PMID 10926774
 
Amegakaryocytic thrombocytopenia and radio-ulnar synostosis are associated with HOXA11 mutation.
Thompson AA, Nguyen LT
Nature genetics. 2000 ; 26 (4) : 397-398.
PMID 11101832
 
Single-translocation and double-chimeric transcripts: detection of NUP98-HOXA9 in myeloid leukemias with HOXA11 or HOXA13 breaks of the chromosomal translocation t(7;11)(p15;p15).
Fujino T, Suzuki A, Ito Y, Ohyashiki K, Hatano Y, Miura I, Nakamura T
Blood. 2002 ; 99 (4) : 1428-1433.
PMID 11830496
 
Homeobox gene expression profile in human hematopoietic multipotent stem cells and T-cell progenitors: implications for human T-cell development.
Taghon T, Thys K, De Smedt M, Weerkamp F, Staal FJ, Plum J, Leclercq G
Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K. 2003 ; 17 (6) : 1157-1163.
PMID 12764384
 
Hox10 and Hox11 genes are required to globally pattern the mammalian skeleton.
Wellik DM, Capecchi MR
Science (New York, N.Y.). 2003 ; 301 (5631) : 363-367.
PMID 12869760
 
HOXA genes are included in genetic and biologic networks defining human acute T-cell leukemia (T-ALL).
Soulier J, Clappier E, Cayuela JM, Regnault A, Garcˆ‚a-Peydrˆ„ M, Dombret H, Baruchel A, Toribio ML, Sigaux F
Blood. 2005 ; 106 (1) : 274-286.
PMID 15774621
 
A new recurrent inversion, inv(7)(p15q34), leads to transcriptional activation of HOXA10 and HOXA11 in a subset of T-cell acute lymphoblastic leukemias.
Speleman F, Cauwelier B, Dastugue N, Cools J, Verhasselt B, Poppe B, Van Roy N, Vandesompele J, Graux C, Uyttebroeck A, Boogaerts M, De Moerloose B, Benoit Y, Selleslag D, Billiet J, Robert A, Huguet F, Vandenberghe P, De Paepe A, Marynen P, Hagemeijer A
Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K. 2005 ; 19 (3) : 358-366.
PMID 15674412
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written06-2006Barbara Cauwelier, Frank Speleman
Centrum Medische Genetica Gent (CMGG), Medical Research Building (MRB), 2 nd floor, room 120.024, De Pintelaan 185, B-9000 Ghent, Belgium

Citation

This paper should be referenced as such :
Cauwelier B, Speleman F . HOXA11 (homeobox A11). Atlas Genet Cytogenet Oncol Haematol. June 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/HOXA11ID40847ch7p15.html

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indexed on : Thu Jul 15 14:45:39 CEST 2010

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