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HSPD1 (Heat Shock 60kDa Protein 1)

Identity

Other namesHSP60
HSP65
HuCHA60
Chaperonin 60kDa (CPN60)
GROEL
SPG13
HGNC HSPD1
Location 2q33.1
Location_base_pair Starts at 198059553 and ends at 198072885 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

Description The HSP60 gene contains 12 exons and 11 introns and was predicted to span over approximately 13 kb of the genomic DNA. The first exon is non-coding region.
Transcription Two transcript variants encoding the same protein have been identified for HSP60 gene. This variant which was named HSP60s1 and HSP60s2 (s for short) comparing it to the much longer regular HSP60 gene.
Pseudogene Twelve pseudogenes located on chromosome 3, 4, 5, 6, 8 and 12 have been associated with HSP60.

Protein

Description The HSP60 consists of 573 amino acids corresponding to a molecular weight of 61.05 kDa. The HSP60 proteins are ubiquitous abundant proteins of eubacterial genomes and also known as the Chaperonin. The Chapenonins divided into 2 subfamilies:
Type I (HSP60/GROEL) and type II (TCP-1 ring complex).
Type I are present in prokaryotes (eubacteria) and organelles (mitochondria and chloroplast).
Type II are presents in archabacteria and in the eukaryotic cytosol.
HSP60 family have the ring-shape oligomeric protein complex with a large central cavity, and composed of 14 proteins which organized into two 7-protein ring that are stacked on each other like double donut. This structure is reversible dissociate in the presence of Mg2+ and ATP, ATPase activity, and have role in folding and assembly of oligomeric protein structures.
Expression HSP60 expression is ubiquitous in the pre-natal, different organ system, immune system, blood, epithelial tissue and cells.
Localisation Mainly in the mitochondria, but growing body of evidence showed that there are also extra-mitochondrial such as in the cell surface, peroxisomes and the endoplasmic reticulum.
Function Assisting mitochondrial protein folding, unfolding, and degradation.
HSP60 also have anti-apoptosis and pro-apoptosis roles.
Homology Up to now more than 150 homologues of HSP60 sequences with pair-wise similarity extending from 40-100% at the amino acid level. Among them: in rat (Rattus norvegicus), pufferfish (Fugu rubripes), zebrafish (Danio rerio), the nematode Caenorhabditis elegans and the mouse (Mus musculus).

Mutations

Germinal Not known in Homo sapiens.
Somatic Hereditary spastic paraplegia (SPG13) is associated with a mutation in the HSP60 gene: The amino acid 72 Valine is changed to Isoleucin.
In Sudden Death Infant Syndrome (SIDS), there are two mutations reported in the coding region of HSP60: N158S and G573A.

Implicated in

Entity Various carcinomas.
Disease HSP60 reported to be over-expressed in exo-cervix cancer, colorectal cancer and prostate carcinoma. But down-regulate its expression in bladder cancer and lung carcinoma.
Prognosis Controversy; worse prognosis in bladder cancer and acute myeloid leukemia. Others shows favorable prognosis, such as in ovarian cancer, osteo sarcoma and esophageal cancer.
Oncogenesis The discrepancy of HSP60 expression and/or prognosis during carcinogenesis might be due to its pro- and anti-apoptotic roles in the cancer cells. The cytosolic and organellar forms of HSP60 might explain the anti- and pro-apoptotic roles.
  
Entity Diseases linked to deficiency of HSP60.
Disease There is a few reports on HSP60 deficiency in human.
Studies reported a patient with systemic mitochondrial encephalopathy, which had lower HSP60 concentration than normal person.
Another HSP60 deficient patient presented with congenital lactic acidemia.
In short chain acyl-CoA dehydrogenase, SCAD.
HSP deficiency also reported in fibroblast derived from a patient with a fatal systemic mitochondrial disease leading to deficiency of multiple mitochondrial enzyme and mitochondrial abnormality.
  
Entity Autoimmune diseases.
Note First clinical trials using HSP60 (peptide 277) has been tested in type-2 diabetes.
Disease HSP60 have been implicated in T cell activation and cause inflammatory reaction. It involved in the pathogenesis of a number of autoimmune diseases in inflammatory conditions such as type-1 diabetes, juvenile chronic arthritis, atherosclerosis, Cohn disease, autoimmunity in women, rheumatoid arthritis, systemic lupus erythematodes, Sjogren syndrome and mix connective tissue diseases.
  

External links

Nomenclature
HGNCHSPD1   5261
Entrez_GeneHSPD1  3329  heat shock 60kDa protein 1 (chaperonin)
Cards
AtlasHSPD1ID40888ch2q33
GeneCardsHSPD1
EnsemblENSG00000144381 [Gene_View]  HSPD1 [Vega]
GenatlasHSPD1
Genomic and cartography
GoldenPathHSPD1  -  2q33.1   chr2:198059553-198072885 -  2q33.1   [Description]    (hg18-Mar_2006)
EnsemblHSPD1 - 2q33.1 [CytoView]
NCBIMapview
OMIM118190 Disease map [OMIM]
OMIM605280 Disease map [OMIM]
HomoloGeneHSPD1
Gene and transcription
GenbankAK312240 [ ENTREZ ]
GenbankAU098504 [ ENTREZ ]
GenbankBC002676 [ ENTREZ ]
GenbankBC003030 [ ENTREZ ]
GenbankBC047350 [ ENTREZ ]
RefSeqNM_002156 [ SRS ]    NM_002156 [ ENTREZ ]
RefSeqNM_199440 [ SRS ]    NM_199440 [ ENTREZ ]
RefSeqAC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeqAC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeqNC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeqNT_005403 [ SRS ]    NT_005403 [ ENTREZ ]
RefSeqNW_001838863 [ SRS ]    NW_001838863 [ ENTREZ ]
RefSeqNW_921618 [ SRS ]    NW_921618 [ ENTREZ ]
CCDSHSPD1 CCDS - NCBI
AceViewHSPD1 AceView - NCBI
UnigeneHs.632539 [ SRS ]    Hs.632539 [ NCBI ]
Fast-db14138 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP10809 [ SRS]    P10809 [ EXPASY ]     P10809 [ INTERPRO ]     P10809 [ UNIPROT ] P10809 [ VarSplice FASTA ]
PrositePS00296 CHAPERONINS_CPN60 [ SRS ]    PS00296 CHAPERONINS_CPN60 [ Expasy ]
InterproIPR001844 Chaprnin_Cpn60 [ SRS ]    IPR001844 Chaprnin_Cpn60 [ EBI ]
InterproIPR002423 Cpn60/TCP-1 [ SRS ]    IPR002423 Cpn60/TCP-1 [ EBI ]
InterproIPR012723 GroEL [ SRS ]    IPR012723 GroEL [ EBI ]
CluSTrP10809
PfamPF00118 Cpn60_TCP1 [ SRS ]    PF00118 Cpn60_TCP1 [ Sanger ]    pfam00118 [ NCBI-CDD ]
BlocksP10809
HPRD00318
Protein Interaction databases
DIPP10809
IntActP10809
Polymorphism : SNP, mutations, diseases
OMIM118190    [ map ]   
OMIM605280    [ map ]   
GENETests118190
GENETests605280
SNPHSPD1 [dbSNP-NCBI]  
SNPNM_002156 [SNP-NCI]  
SNPNM_199440 [SNP-NCI]  
SNPHSPD1 [GeneSNPs - Utah]  HSPD1] [HGBASE - SRS]
HAPMAPHSPD1 [HAPMAP]  
COSMICHSPD1 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDHSPD1
Genetic AssociationHSPD1
CDC HuGEHSPD1
General knowledge
Family BrowserHSPD1 [UCSC Family Browser]
SOURCENM_002156
SOURCENM_199440
SMDHs.632539
SAGEHs.632539
GOnucleotide binding [Amigo]  nucleotide binding
GOATP binding [Amigo]  ATP binding
GOcytoplasm [Amigo]  cytoplasm
GOmitochondrion [Amigo]  mitochondrion
GOmitochondrial inner membrane [Amigo]  mitochondrial inner membrane
GOmitochondrial matrix [Amigo]  mitochondrial matrix
GOprotein folding [Amigo]  protein folding
GOresponse to unfolded protein [Amigo]  response to unfolded protein
GOcyclin-dependent protein kinase activating kinase holoenzyme complex [Amigo]  cyclin-dependent protein kinase activating kinase holoenzyme complex
GOprotein import into mitochondrial matrix [Amigo]  protein import into mitochondrial matrix
GOregulation of apoptosis [Amigo]  regulation of apoptosis
GOinterspecies interaction between organisms [Amigo]  interspecies interaction between organisms
GOunfolded protein binding [Amigo]  unfolded protein binding
GOchaperone binding [Amigo]  chaperone binding
KEGGType I diabetes mellitus
KEGGPrion disease
PubGeneHSPD1
TreeFamHSPD1
CTD3329 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeHSPD1 Related clones (RZPD - Berlin)
PubMed
PubMed140 Pubmed reference(s) in Entrez

Bibliography

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Contributor(s)

Written02-2007Ahmad Faried, Leri S Faried

Citation

This paper should be referenced as such :
Faried A, Faried LS . HSPD1 (Heat Shock 60kDa Protein 1). Atlas Genet Cytogenet Oncol Haematol. February 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/HSPD1ID40888ch2q33.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:23:49 2008


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