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IL3 (interleukin-3)

Identity

HGNC (Hugo) IL3
Location 5q31
Location_base_pair Starts at 131396347 and ends at 131398896 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description 5 exons
Transcription 674 bp transcript with a 458 bp of coding sequence

Protein

Description 152 amino acids; 17 kDa
Expression IL3 is produced by activated T cells, monocytes/macrophages and stroma cells
Function cytokine; multipotent hematopoietic growth factor; induces proliferation, maturation and probably self-renewal of pluripotent hematopoietic stem cells and cells of myeloid, erythroid and megakaryocytic lineages; IL-3 plays a more specialized role on basophil and mast cells; role through activation of the IL-3 receptor (IL-3R) complex consisting of alpha and beta subunits, which in turn induces activation of JAK2/ STAT5 , and induction of c-myc (cell-cycle progression and DNA synthesis), and activation of the Ras pathway (suppression of apoptosis); IL3 and GM-CSF have overlapping but distinct biological properties

Implicated in

Entity t(5;14)(q31;q32)
Disease B-cell acute lymphoblastic leukemia (ALL) with hypereosinophilia
Prognosis poor
Cytogenetics t(5;14) may be the sole anomaly or accompanied with other anomalies
Hybrid/Mutated Gene break in the promoter region of IL3 and in the Jh region of IgH
Abnormal Protein the immunoglobulin gene promoter controls the expression of IL3
Oncogenesis over-expression of IL3
  

External links

Nomenclature
HGNC (Hugo)IL3   6011
Entrez_Gene (NCBI)IL3  3562  interleukin 3 (colony-stimulating factor, multiple)
Cards
AtlasIL3ID60
GeneCards (Weizmann)IL3
Ensembl (Hinxton)ENSG00000164399 [Gene_View]  IL3 [Vega]
AceView (NCBI)IL3
Genatlas (Paris)IL3
euGene (Indiana)3562
SOURCE (Stanford)NM_000588
Gene Expression (Array Express) ENSG00000164399
Genomic and cartography
GoldenPath (UCSC)IL3  -  5q31   chr5:131396347-131398896 +  5q31.1   [Description]    (hg19-Feb_2009)
EnsemblIL3 - 5q31.1 [CytoView]
Mapping of homologs : NCBIIL3 [Mapview]
OMIM147740   
Gene and transcription
Gene : Genbank (Entrez)BC066272 BC066273 BC066274 BC066275 BC066276
Reference sequence (RefSeq transcript) :SRSNM_000588
Reference transcript : EntrezNM_000588
RefSeq genomic : SRSAC_000048 AC_000137 NC_000005 NT_034772 NW_001838952 NW_922784
RefSeq genomic : EntrezAC_000048 AC_000137 NC_000005 NT_034772 NW_001838952 NW_922784
Consensus coding sequences : CCDS NCBIIL3
Cluster EST : UnigeneHs.694 [ SRS ] Hs.694 [ NCBI ]
Alternative Splicing : Fast-db (Paris)9454
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP08700 (SRS) P08700 (Expasy) P08700 (Uniprot)
With graphics : InterProP08700
Splice isoforms : VarSplice FASTAP08700(VarSplice FASTA)
Domains : Interpro (SRS)4_helix_cytokine-like_core    Interleukin_3   
Domains : Interpro (EBI)4_helix_cytokine-like_core    Interleukin_3   
Related proteins : CluSTrP08700
Domain families : Pfam SRSIL3 (PF02059)   
Domain families : Pfam SangerIL3 (PF02059)   
Domain families : Pfam NCBIpfam02059   
Blocks (Seattle)P08700
Crystal structure of protein : PDB SRS1JLI   
Crystal structure of protein : PDBSum1JLI   
Crystal structure of protein : IMB1JLI   
Crystal structure of protein : PDB RSDB1JLI   
Human Protein AtlasENSG00000164399
HPRD00987
Protein Interaction databases
DIP (DOE-UCLA)P08700
IntAct (EBI)P08700
FunCoupENSG00000164399
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIIL3
SNP : GeneSNP UtahIL3
SNP : HGBaseIL3
Genetic variants : HAPMAPIL3
Somatic Mutations in Cancer : COSMICIL3 
Translocation Breakpoints in Cancer : TICdbIL3 
Mutations and Diseases : HGMDIL3
Hereditary diseases : OMIM147740   
Hereditary diseases : GENETests147740   
Diseases : Genetic AssociationIL3
General knowledge
Homologs : HomoloGeneIL3
Homology/Alignments : Family Browser UCSCIL3
Phylogenetic Trees/Animal Genes : TreeFamIL3
Chemical/Protein Interactions : CTD3562
Keywords Ontology : AmiGOcytokine activity  interleukin-3 receptor binding  protein binding  extracellular region  extracellular space  immune response  cell-cell signaling  nervous system development  growth factor activity  positive regulation of cell proliferation  positive regulation of tyrosine phosphorylation of Stat5 protein  positive regulation of DNA replication  positive regulation of survival gene product expression  positive regulation of peptidyl-tyrosine phosphorylation  
Keywords Ontology : EGO-EBIcytokine activity  interleukin-3 receptor binding  protein binding  extracellular region  extracellular space  immune response  cell-cell signaling  nervous system development  growth factor activity  positive regulation of cell proliferation  positive regulation of tyrosine phosphorylation of Stat5 protein  positive regulation of DNA replication  positive regulation of survival gene product expression  positive regulation of peptidyl-tyrosine phosphorylation  
Pathways : BIOCARTAErythrocyte Differentiation Pathway [Genes]    Regulation of BAD phosphorylation [Genes]    Cytokine Network [Genes]    The Role of Eosinophils in the Chemokine Network of Allergy [Genes]    Cytokines and Inflammatory Response [Genes]    Regulation of hematopoiesis by cytokines [Genes]    IL 17 Signaling Pathway [Genes]    IL 3 signaling pathway [Genes]    Dendritic cells in regulating TH1 and TH2 Development [Genes]   
Pathways : KEGGCytokine-cytokine receptor interactionHematopoietic cell lineageFc epsilon RI signaling pathwayApoptosisJak-STAT signaling pathway
Other databases
Probes
Probes : ImagenesIL3 Related clones (RZPD - Berlin)
Literature
PubMed90 Pubmed reference(s) in Entrez
PubGeneIL3

Bibliography

Human IL-3 (multi-CSF): identification by expression cloning of a novel hematopoietic growth factor related to murine IL-3.
Yang YC, Ciarletta AB, Temple PA, Chung MP, Kovacic S, Witek-Giannotti JS, Leary AC, Kriz R, Donahue RE, Wong GG
Cell. 1986 ; 47 (1) : 3-10.
PMID 3489530
 
The t(5;14) chromosomal translocation in a case of acute lymphocytic leukemia joins the interleukin-3 gene to the immunoglobulin heavy chain gene.
Grimaldi JC, Meeker TC
Blood. 1989 ; 73 (8) : 2081-2085.
PMID 2499362
 
Regulation of granulocyte-macrophage colony-stimulating factor and interleukin 3 expression.
Nimer SD, Uchida H
Stem cells (Dayton, Ohio). 1995 ; 13 (4) : 324-335.
PMID 7549890
 
Function and signal transduction mediated by the interleukin 3 receptor system in hematopoiesis.
Hara T, Miyajima A
Stem cells (Dayton, Ohio). 1996 ; 14 (6) : 605-618.
PMID 8948019
 
The physiologic role of interleukin-3, interleukin-5, granulocyte-macrophage colony-stimulating factor, and the beta c receptor system.
Burdach S, Nishinakamura R, Dirksen U, Murray R
Current opinion in hematology. 1998 ; 5 (3) : 177-180.
PMID 9664156
 
Interleukin-3 in hematology and oncology: current state of knowledge and future directions.
Mangi MH, Newland AC
Cytokines, cellular & molecular therapy. 1999 ; 5 (2) : 87-95.
PMID 10515681
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written12-1999Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . IL3 (interleukin-3). Atlas Genet Cytogenet Oncol Haematol. December 1999 .
URL : http://AtlasGeneticsOncology.org/Genes/IL3ID60.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 15 14:46:08 CEST 2010

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