Atlas of Genetics and Cytogenetics in Oncology and Haematology


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JJAZ1 (joined to JAZF1)

Identity

Other namesKIAA0160,
CHET9
HGNC SUZ12
Location 17q11.2

DNA/RNA

Description 16 exons; spans 64 kb;
Transcription 4,441 kb cDNA
Pseudogene yes, also located in 17q11.2, contains exons 1-9

Protein

Description 739 amino acids
Expression tissue and stage specifically expressed; expression is noted in embryonic, juvenile and adult tissues. The tissues or organs that express SUZ12 are: bladder, blood, bone, bone marrow, brain, cervix, colon, eye, heart, kidney, liver, lung, lymph node, mammary gland, muscle, ovary, pancreas, peripheral nervous system, placenta, prostate, skin, soft tissue, stomach, tongue, testis, uterus, and the vascular system.
Localisation nucleus
Function SUZ12 is a zinc finger protein and member of the polycomb group (PcG) protein family. They act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are required to maintain the repression during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. SUZ12 is a component of the PRC2 complex, which methylates Lys-9 and Lys-27 residues of histone H3. SUZ12 is induced by E2F1 transcription factor.
Homology Polycomb group of proteins

Mutations

Germinal deleted in patients with Neurofibromatosis type 1 and large deletions in the NF1 gene region type-1 (spanning 1.4 Mb)
Somatic disrupted by deletion breakpoints of Neurofibromatosis type 1 patients with deletions that span 1.2 Mb (type-2 deletions). JJAZ1/SUZ12 has been identified at the breakpoints of a recurrent chromosomal translocation reported in endometrial stromal sarcoma and the translocation mediated recombination of both leads to a JJAZ1/JAZF1 fusion gene.

Implicated in

Entity endometrial stromal neoplasms with classic histology
Cytogenetics nonrandom t(7;17)(p15; q21) in endometrial stromal neoplasms
Hybrid/Mutated Gene JJAZ1/JAZF1 fusion gene
Abnormal Protein unknown
Oncogenesis unknown
  

External links

Nomenclature
HGNCSUZ12   17101
Entrez_GeneSUZ12  23512  suppressor of zeste 12 homolog (Drosophila)
Cards
AtlasJJAZ1ID41039ch17q11
GeneCardsSUZ12
EnsemblSUZ12 [Search_View]   ENSG00000178691 [Gene_View]
GenatlasSUZ12
GeneLynxSUZ12
eGenomeSUZ12
euGene23512
Genomic and cartography
GoldenPathSUZ12  -  17q11.2   chr17:27288185-27352162 +  17q21   [Description]    (hg18-Mar_2006)
EnsemblSUZ12 - 17q21 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneSUZ12
Gene and transcription
GenbankAK074333 [ ENTREZ ]
GenbankAK290014 [ ENTREZ ]
GenbankBC015704 [ ENTREZ ]
GenbankBC018583 [ ENTREZ ]
GenbankD63881 [ ENTREZ ]
RefSeqNM_015355 [ SRS ]    NM_015355 [ ENTREZ ]
RefSeqAC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeqAC_000149 [ SRS ]    AC_000149 [ ENTREZ ]
RefSeqNC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeqNT_010799 [ SRS ]    NT_010799 [ ENTREZ ]
RefSeqNW_001838430 [ SRS ]    NW_001838430 [ ENTREZ ]
RefSeqNW_926772 [ SRS ]    NW_926772 [ ENTREZ ]
AceViewSUZ12 AceView - NCBI
UnigeneHs.462732 [ SRS ]    Hs.462732 [ NCBI ]     HS462732 [ spliceNest ]
Fast-db7902 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ15022 [ SRS]    Q15022 [ EXPASY ]     Q15022 [ INTERPRO ]     Q15022 [ UNIPROT ]
PrositePS00028 ZINC_FINGER_C2H2_1 [ SRS ]    PS00028 ZINC_FINGER_C2H2_1 [ Expasy ]
PrositePS50157 ZINC_FINGER_C2H2_2 [ SRS ]    PS50157 ZINC_FINGER_C2H2_2 [ Expasy ]
InterproIPR007087 Znf_C2H2 [ SRS ]    IPR007087 Znf_C2H2 [ EBI ]
InterproIPR015880 Znf_C2H2-like [ SRS ]    IPR015880 Znf_C2H2-like [ EBI ]
CluSTrQ15022
SmartSM00355 ZnF_C2H2 [EMBL]
BlocksQ15022
HPRD06949
Protein Interaction databases
DIPQ15022
IntActQ15022
Polymorphism : SNP, mutations, diseases
OMIM606245    [ map ]   
GENECLINICS606245
SNPSUZ12 [dbSNP-NCBI]  
SNPNM_015355 [SNP-NCI]  
SNPSUZ12 [GeneSNPs - Utah]  SUZ12] [HGBASE - SRS]
HAPMAPSUZ12 [HAPMAP]  
COSMICSUZ12 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbSUZ12 [Translocation breakpoints In Cancer]  
HGMDSUZ12
General knowledge
Family BrowserSUZ12 [UCSC Family Browser]
SOURCENM_015355
SMDHs.462732
SAGEHs.462732
GOnegative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GOsex chromatin [Amigo]  sex chromatin
GOchromatin binding [Amigo]  chromatin binding
GOintracellular [Amigo]  intracellular
GOnucleus [Amigo]  nucleus
GOtranscription [Amigo]  transcription
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOzinc ion binding [Amigo]  zinc ion binding
GOpositive regulation of cell proliferation [Amigo]  positive regulation of cell proliferation
GOchromatin modification [Amigo]  chromatin modification
GOhistone methylation [Amigo]  histone methylation
GOhistone ubiquitination [Amigo]  histone ubiquitination
GOESC/E(Z) complex [Amigo]  ESC/E(Z) complex
GOhistone methyltransferase activity [Amigo]  histone methyltransferase activity
GOmetal ion binding [Amigo]  metal ion binding
BIOCARTAThe PRC2 Complex Sets Long-term Gene Silencing Through Modification of Histone Tails    [Genes]
PubGeneSUZ12
TreeFamSUZ12
CTD23512 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeSUZ12 Related clones (RZPD - Berlin)
PubMed
PubMed26 Pubmed reference(s) in LocusLink

Bibliography

JAZF1/JJAZ1 gene fusion in endometrial stromal sarcomas: molecular analysis by reverse transcriptase-polymerase chain reaction optimized for paraffin-embedded tissue.
Hrzenjak A, Moinfar F, Tavassoli FA, Strohmeier B, Kremser ML, Zatloukal K, Denk H
The Journal of molecular diagnostics : JMD. 2005 ; 7 (3) : 388-395.
PMID 16049311
 
High frequency of mosaicism among patients with neurofibromatosis type 1 (NF1) with microdeletions caused by somatic recombination of the JJAZ1 gene.
Kehrer-Sawatzki H, Kluwe L, Sandig C, Kohn M, Wimmer K, Krammer U, Peyrl A, Jenne DE, Hansmann I, Mautner VF
American journal of human genetics. 2004 ; 75 (3) : 410-423.
PMID 15257518
 
Molecular detection of JAZF1-JJAZ1 gene fusion in endometrial stromal neoplasms with classic and variant histology: evidence for genetic heterogeneity.
Huang HY, Ladanyi M, Soslow RA
The American journal of surgical pathology. 2004 ; 28 (2) : 224-232.
PMID 15043312
 
Cytogenetic and molecular genetic analyses of endometrial stromal sarcoma: nonrandom involvement of chromosome arms 6p and 7p and confirmation of JAZF1/JJAZ1 gene fusion in t(7;17).
Micci F, Walter CU, Teixeira MR, Panagopoulos I, Bjerkehagen B, Saeter G, Heim S
Cancer genetics and cytogenetics. 2003 ; 144 (2) : 119-124.
PMID 12850374
 
Mitotic recombination mediated by the JJAZF1 (KIAA0160) gene causing somatic mosaicism and a new type of constitutional NF1 microdeletion in two children of a mosaic female with only few manifestations.
Petek E, Jenne DE, Smolle J, Binder B, Lasinger W, Windpassinger C, Wagner K, Kroisel PM, Kehrer-Sawatzki H
Journal of medical genetics. 2003 ; 40 (7) : 520-525.
PMID 12843325
 
Frequent fusion of the JAZF1 and JJAZ1 genes in endometrial stromal tumors.
Koontz JI, Soreng AL, Nucci M, Kuo FC, Pauwels P, van Den Berghe H, Cin PD, Fletcher JA, Sklar J
Proceedings of the National Academy of Sciences of the United States of America. 2001 ; 98 (11) : 6348-6353.
PMID 11371647
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written12-2005Hildegard Kehrer-Sawatzki
Department of Human Genetics, University of Ulm, Albert-Einstein-Allee 11, 89081,Ulm, Germany

Citation

This paper should be referenced as such :
Kehrer-Sawatzki H . JJAZ1 (joined to JAZF1). Atlas Genet Cytogenet Oncol Haematol. December 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/JJAZ1ID41039ch17q11.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:14:45 2008


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