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SUZ12 (joined to JAZF1)

Identity

Other namesJJAZ1 (joined to JAZF1)
KIAA0160,
CHET9
HGNC (Hugo) SUZ12
LocusID (NCBI) 23512
Location 17q11.2
Location_base_pair Starts at 30264044 and ends at 30328057 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description 16 exons; spans 64 kb;
Transcription 4,441 kb cDNA
Pseudogene yes, also located in 17q11.2, contains exons 1-9

Protein

Description 739 amino acids
Expression tissue and stage specifically expressed; expression is noted in embryonic, juvenile and adult tissues. The tissues or organs that express SUZ12 are: bladder, blood, bone, bone marrow, brain, cervix, colon, eye, heart, kidney, liver, lung, lymph node, mammary gland, muscle, ovary, pancreas, peripheral nervous system, placenta, prostate, skin, soft tissue, stomach, tongue, testis, uterus, and the vascular system.
Localisation nucleus
Function SUZ12 is a zinc finger protein and member of the polycomb group (PcG) protein family. They act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are required to maintain the repression during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. SUZ12 is a component of the PRC2 complex, which methylates Lys-9 and Lys-27 residues of histone H3. SUZ12 is induced by E2F1 transcription factor.
Homology Polycomb group of proteins

Mutations

Germinal deleted in patients with Neurofibromatosis type 1 and large deletions in the NF1 gene region type-1 (spanning 1.4 Mb)
Somatic disrupted by deletion breakpoints of Neurofibromatosis type 1 patients with deletions that span 1.2 Mb (type-2 deletions). JJAZ1/SUZ12 has been identified at the breakpoints of a recurrent chromosomal translocation reported in endometrial stromal sarcoma and the translocation mediated recombination of both leads to a JJAZ1/JAZF1 fusion gene.

Implicated in

Entity endometrial stromal neoplasms with classic histology
Cytogenetics nonrandom t(7;17)(p15; q21) in endometrial stromal neoplasms
Hybrid/Mutated Gene JJAZ1/JAZF1 fusion gene
Abnormal Protein unknown
Oncogenesis unknown
  

External links

Nomenclature
HGNC (Hugo)SUZ12   17101
Entrez_Gene (NCBI)SUZ12  23512  suppressor of zeste 12 homolog (Drosophila)
Cards
AtlasJJAZ1ID41039ch17q11
GeneCards (Weizmann)SUZ12
Ensembl (Hinxton)ENSG00000178691 [Gene_View]  chr17:30264044-30328057 [Contig_View]  SUZ12 [Vega]
AceView (NCBI)SUZ12
Genatlas (Paris)SUZ12
euGene (Indiana)23512
SOURCE (Stanford)NM_015355
Genomic and cartography
GoldenPath (UCSC)SUZ12  -  17q11.2   chr17:30264044-30328057 +  17q11.2   [Description]    (hg19-Feb_2009)
EnsemblSUZ12 - 17q11.2 [CytoView]
Mapping of homologs : NCBISUZ12 [Mapview]
OMIM606245   
Gene and transcription
Genbank (Entrez)AK074333 AK290014 BC015704 BC018583 D63881
RefSeq transcript (SRS)NM_015355
RefSeq transcript (Entrez)NM_015355
RefSeq genomic (SRS)AC_000149 NC_000017 NG_009237 NT_010799 NW_001838430
RefSeq genomic (Entrez)AC_000149 NC_000017 NG_009237 NT_010799 NW_001838430
Consensus coding sequences : CCDS (NCBI)SUZ12
Cluster EST : UnigeneHs.462732 [ SRS ] Hs.462732 [ NCBI ]
Alternative Splicing : Fast-db (Paris)7902
Alternative Splicing GalleryENSG00000178691
Gene ExpressionSUZ12 [ NCBI-GEO ]   SUZ12 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15022 (SRS) Q15022 (Uniprot)
With graphics : InterProQ15022
Splice isoforms : SwissVarQ15022(Swissvar)
Domaine pattern : Prosite (SRS)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Polycomb_protein_VEFS-Box    Znf_C2H2-like   
Domains : Interpro (EBI)Polycomb_protein_VEFS-Box    Znf_C2H2-like   
Related proteins : CluSTrQ15022
Domain families : Pfam (SRS)VEFS-Box (PF09733)   
Domain families : Pfam (Sanger)VEFS-Box (PF09733)   
Domain families : Pfam (NCBI)pfam09733   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Blocks (Seattle)Q15022
Human Protein AtlasENSG00000178691
HPRD06949
IPIIPI00299526   
Protein Interaction databases
DIP (DOE-UCLA)Q15022
IntAct (EBI)Q15022
FunCoupENSG00000178691
REACTOMESUZ12
BioGRIDSUZ12
InParanoidQ15022
Interologous Interaction database Q15022
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SUZ12
SNP (GeneSNP Utah)SUZ12
SNP : HGBaseSUZ12
Genetic variants : HAPMAPSUZ12
Cancer Gene: CensusSUZ12 
Somatic Mutations in Cancer : COSMICSUZ12 
CONAN: Copy Number AnalysisSUZ12 
Rearrangement : COSMICJAZF1 [7p15.2]  -  SUZ12 [17q11.2]
Mutations and Diseases : HGMDSUZ12
OMIM606245   
GENETests606245   
Disease Genetic AssociationSUZ12
Huge Navigator SUZ12 [HugePedia]  SUZ12 [HugeCancerGEM]
Genomic VariantsSUZ12
snp3D : Map Gene to Disease23512
General knowledge
Homologs : HomoloGeneSUZ12
Homology/Alignments : Family Browser (UCSC)SUZ12
Phylogenetic Trees/Animal Genes : TreeFamSUZ12
Chemical/Protein Interactions : CTD23512
Chemical/Pharm GKB GenePA134936035
Clinical trialSUZ12
Cancer Resource (Charite)ENSG00000178691
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  sex chromatin  chromatin binding  protein binding  intracellular  nucleus  regulation of transcription, DNA-dependent  zinc ion binding  positive regulation of cell proliferation  chromatin modification  histone methylation  histone ubiquitination  methylated histone residue binding  ESC/E(Z) complex  ESC/E(Z) complex  histone methyltransferase activity  negative regulation of cell differentiation  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  sex chromatin  chromatin binding  protein binding  intracellular  nucleus  regulation of transcription, DNA-dependent  zinc ion binding  positive regulation of cell proliferation  chromatin modification  histone methylation  histone ubiquitination  methylated histone residue binding  ESC/E(Z) complex  ESC/E(Z) complex  histone methyltransferase activity  negative regulation of cell differentiation  metal ion binding  
Pathways : BIOCARTAThe PRC2 Complex Sets Long-term Gene Silencing Through Modification of Histone Tails [Genes]   
Other databases
Probes
Probes : ImagenesSUZ12 Related clones (RZPD - Berlin)
Litterature
PubMed68 Pubmed reference(s) in Entrez
PubGeneSUZ12
iHOPSUZ12

Bibliography

JAZF1/JJAZ1 gene fusion in endometrial stromal sarcomas: molecular analysis by reverse transcriptase-polymerase chain reaction optimized for paraffin-embedded tissue.
Hrzenjak A, Moinfar F, Tavassoli FA, Strohmeier B, Kremser ML, Zatloukal K, Denk H
The Journal of molecular diagnostics : JMD. 2005 ; 7 (3) : 388-395.
PMID 16049311
 
High frequency of mosaicism among patients with neurofibromatosis type 1 (NF1) with microdeletions caused by somatic recombination of the JJAZ1 gene.
Kehrer-Sawatzki H, Kluwe L, Sandig C, Kohn M, Wimmer K, Krammer U, Peyrl A, Jenne DE, Hansmann I, Mautner VF
American journal of human genetics. 2004 ; 75 (3) : 410-423.
PMID 15257518
 
Molecular detection of JAZF1-JJAZ1 gene fusion in endometrial stromal neoplasms with classic and variant histology: evidence for genetic heterogeneity.
Huang HY, Ladanyi M, Soslow RA
The American journal of surgical pathology. 2004 ; 28 (2) : 224-232.
PMID 15043312
 
Cytogenetic and molecular genetic analyses of endometrial stromal sarcoma: nonrandom involvement of chromosome arms 6p and 7p and confirmation of JAZF1/JJAZ1 gene fusion in t(7;17).
Micci F, Walter CU, Teixeira MR, Panagopoulos I, Bjerkehagen B, Saeter G, Heim S
Cancer genetics and cytogenetics. 2003 ; 144 (2) : 119-124.
PMID 12850374
 
Mitotic recombination mediated by the JJAZF1 (KIAA0160) gene causing somatic mosaicism and a new type of constitutional NF1 microdeletion in two children of a mosaic female with only few manifestations.
Petek E, Jenne DE, Smolle J, Binder B, Lasinger W, Windpassinger C, Wagner K, Kroisel PM, Kehrer-Sawatzki H
Journal of medical genetics. 2003 ; 40 (7) : 520-525.
PMID 12843325
 
Frequent fusion of the JAZF1 and JJAZ1 genes in endometrial stromal tumors.
Koontz JI, Soreng AL, Nucci M, Kuo FC, Pauwels P, van Den Berghe H, Cin PD, Fletcher JA, Sklar J
Proceedings of the National Academy of Sciences of the United States of America. 2001 ; 98 (11) : 6348-6353.
PMID 11371647
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written12-2005Hildegard Kehrer-Sawatzki
Department of Human Genetics, University of Ulm, Albert-Einstein-Allee 11, 89081,Ulm, Germany

Citation

This paper should be referenced as such :
Kehrer-Sawatzki H . SUZ12 (joined to JAZF1). Atlas Genet Cytogenet Oncol Haematol. December 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/JJAZ1ID41039ch17q11.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/38312/1/12-2005-JJAZ1ID41039ch17q11.pdf   [ Bibliographic record ]

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 28 14:59:55 CEST 2012

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