PCLAF (PCNA clamp associated factor)

2011-05-01   Shannon Joseph , Lingbo Hu , Fiona Simpson 

University of Queensland Diamantina Institute, University of Queensland, Brisbane, Australia

Identity

HGNC
LOCATION
15q22.31
LOCUSID
ALIAS
KIAA0101,L5,NS5ATP9,OEATC,OEATC-1,OEATC1,PAF,PAF15,p15(PAF),p15/PAF,p15PAF
FUSION GENES

DNA/RNA

Note

Murine gene embryonic expression shows highly restricted expression of KIAA0101 in facial prominences, limbs, somites, brain, spinal cord and hair follicles. It has a suggested role in embryonic development (van Beuren et al., 2007).
Atlas Image
DNA diagram. KIAA0101 9768 chr: 62444265-62460755. One transcript, 4 exons.

Description

The gene is composed of 4 exons.

Transcription

One transcript. RNA was expressed as a 1.1 kb message in liver, pancreas and placenta at high levels (Yu et al., 2001). RNA profiling shows it is highly expressed in a number of tumors, specifically in esophageal tumors, anaplastic thyroid carcinomas, pancreatic cancer and non-small-cell lung cancer lines (Yu et al., 2001; Hosokawa et al., 2007). KIAA0101 was also reported to be down-regulated in colon cancer cells (Simpson et al., 2006) and human hepatocellular carcinoma (Guo et al., 2006). Nuclear protein NF-kappaB (p50) (Li et al., 2008), the Hepatitis C virus protein non-structural protein 5A (NS5A) (Shi et al., 2008) and ATF3 (Turchi et al., 2009) bind to the promoter region upstream of the KIAA0101 transcription initiation site promoting transcription in response to DNA damage.

Pseudogene

None.

Proteins

Note

NS5ATP9, Hepatitis C virus NS5A-transactivated protein 9, HCV NS5A-transactivated protein 9, Overexpressed in anaplastic thyroid carcinoma-1, OEATC-1, OEATC1, p15(PAF), L5.
Atlas Image
Protein diagram. 111 aa in length, single transcript, mutation I-A at position 65 and mutation F-A at position 68 results in loss of PCNA binding.

Description

The KIAA0101 gene encodes for a 111 amino acid 15 kDa protein. It contains a conserved proliferating cell nuclear antigen (PCNA)-binding motif (Yu et al., 2001).

Expression

Predominant expression in liver, pancreas and brain. Not detected in heart or liver (Yu et al., 2001). The KIAA0101 protein was down-regulated in human hepatocellular carcinoma (Guo et al., 2006; Yuan et al., 2007). Increased protein levels have been detected in pancreatic cancer cells (Hosokawa et al., 2007).

Localisation

Nucleus, mitochondrion (Yu et al., 2001; Guo et al., 2006; Simpson et al., 2006; Yuan et al., 2007).

Function

The KIAA0101 protein binds to PCNA through a conserved PCNA binding domain. PCNA is required for DNA replication or repair as a supplementary factor for DNA polymerase (Paunesku et al., 2001). Proteins bound to PCNA can prevent its binding to DNA polymerase, in turn leading to inhibition of DNA synthesis, cell cycle progression and G1 cell cycle arrest (Yuan et al., 2007). PCNA binding proteins also interact with each other to modulate this regulation. For example, KIAA0101 also interacts in a complex with p33ING1 isoform 2, another PCNA binding protein which is a potential tumor suppressor and regulator of p53 (Simpson et al., 2006). UV irradiation caused increased association of KIAA0101 with PCNA suggesting that this association occurs in response to DNA damage. KIAA0101 also competes with p21WAF for binding to PCNA (Yu et al., 2001). KIAA0101 most recently been shown to act in concert with ATF3 to control genomic integrity after UV stress (Turchi et al., 2009). KIAA0101 expression levels are also regulated by NF-kappaB, this protein family having significant roles in apoptosis, cell cycle regulation and onocgenesis (Hosokawa et al., 2007; Li et al., 2008). Together this data suggests a likely role for KIAA0101 in DNA repair and in protection from UV-induced cell death.

Mutations

Note

Experimentally mutation I-A at position 65 and F-A at position 68 result in loss of PCNA binding (Yu et al., 2001). No other mutations have been described. Screening of colon tumour samples identified a polymorphism in the intronic region just prior to the start of exon 2 (982-15delT) (Simpson et al., 2006).

Implicated in

Entity name
Hepatocellular carcinoma
Disease
KIAA0101 expression was proposed to promote growth advantage and hypoxic insult resistance and be associated with promoting cell proliferation (Yuan et al., 2007). KIAA0101 overexpression was associated with concomitant p53 mutation and vascular invasion (Yuan et al., 2007). This study suggested that high expression in hepatocellular carcinoma was indicative of tumour recurrence, metastatic potential and poor prognosis (Yuan et al., 2007). KIAA0101 was also reported to be downregulated in hepatocellular carcinoma (Guo et al., 2006). This study suggested that KIAA0101 had a growth inhibitory effect.
Entity name
Astrocytomas
Disease
Grade IV (glioblastoma multiforme) astrocytomas had 5 times higher expression levels when compared to Grade I (pilocytic) astrocyomas suggesting that KIAA0101 abundance correlates with malignancy grade in human astrocytes (Marie et al., 2008).
Entity name
Pancreatic cancer
Disease
Pancreatic cells overexpress KIAA0101 both at cDNA and protein level. Knock down of KIAA0101 by siRNA attenuated proliferation and DNA replication whereas overexpression enhanced cell growth in pancreatic cancer cell lines (Hosokawa et al., 2007).
Entity name
Anaplastic thyroid carcinoma
Disease
Anaplastic thyroid carcinoma cell lines had significant overexpression of KIAA0101. Cell growth was inhibited by silencing KIAA0101 expression using siRNA. KIAA0101 may be oncogenic or cell growth-promoting but the mechanism for this is not understood (Mizutani et al., 2005).
Disease
High expression of KIAA0101 (along with CCNB1 (cyclin B1), CDC2, CDKN3A, CKS1B, ANP32E) was associated with better survival/response rate in a univariate analysis following CHOP (cyclophosphamide, vincristine, doxorubicin, prednisone) chemotherapy for follicular lymphoma treatment. Identification of these proteins aims to develop a follicular lymphoma international prognostic index to aid in informing a successful treatment strategy (Bjorck et al., 2005).
Oncogenesis
This gene is thought to be oncogenic through modulation of DNA repair pathways via interaction with PCNA.

Bibliography

Pubmed IDLast YearTitleAuthors
155764762005High expression of cyclin B1 predicts a favorable outcome in patients with follicular lymphoma.Björck E et al
177171292007Genomic profiling of circulating plasma RNA for the analysis of cancer.Collado M et al
166469902006KIAA0101 (OEACT-1), an expressionally down-regulated and growth-inhibitory gene in human hepatocellular carcinoma.Guo M et al
173635752007Oncogenic role of KIAA0101 interacting with proliferating cell nuclear antigen in pancreatic cancer.Hosokawa M et al
187279152008NS5ATP9 gene regulated by NF-kappaB signal pathway.Li K et al
179606222008Maternal embryonic leucine zipper kinase transcript abundance correlates with malignancy grade in human astrocytomas.Marie SK et al
206462882010Changes in expression of oestrogen regulated and proliferation genes with neoadjuvant treatment highlight heterogeneity of clinical resistance to the aromatase inhibitor, letrozole.Miller WR et al
157893622005Overexpressed in anaplastic thyroid carcinoma-1 (OEATC-1) as a novel gene responsible for anaplastic thyroid carcinoma.Mizutani K et al
77885271995Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1.Nagase T et al
116820062001Proliferating cell nuclear antigen (PCNA): ringmaster of the genome.Paunesku T et al
180688942008NS5ATP9, a gene up-regulated by HCV NS5A protein.Shi L et al
162887402006The PCNA-associated factor KIAA0101/p15(PAF) binds the potential tumor suppressor product p33ING1b.Simpson F et al
192190662009ATF3 and p15PAF are novel gatekeepers of genomic integrity upon UV stress.Turchi L et al
113139792001p15(PAF), a novel PCNA associated factor with increased expression in tumor tissues.Yu P et al
178757652007Overexpression of KIAA0101 predicts high stage, early tumor recurrence, and poor prognosis of hepatocellular carcinoma.Yuan RH et al
168150992007Murine embryonic expression of the gene for the UV-responsive protein p15(PAF).van Bueren KL et al

Other Information

Locus ID:

NCBI: 9768
MIM: 610696
HGNC: 28961
Ensembl: ENSG00000166803

Variants:

dbSNP: 9768
ClinVar: 9768
TCGA: ENSG00000166803
COSMIC: PCLAF

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000166803ENST00000300035Q15004
ENSG00000166803ENST00000380258Q15004
ENSG00000166803ENST00000558008H0YMA4
ENSG00000166803ENST00000559519H0YKX3
ENSG00000166803ENST00000625619H0YMA4

Expression (GTEx)

0
5
10
15
20
25
30

Pathways

PathwaySourceExternal ID
DNA RepairREACTOMER-HSA-73894
DNA Damage BypassREACTOMER-HSA-73893
Translesion synthesis by Y family DNA polymerases bypasses lesions on DNA templateREACTOMER-HSA-110313
Termination of translesion DNA synthesisREACTOMER-HSA-5656169

References

Pubmed IDYearTitleCitations
230009652012Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.93
240553452013PAF and EZH2 induce Wnt/β-catenin signaling hyperactivation.66
216285902011Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrate.37
192190662009ATF3 and p15PAF are novel gatekeepers of genomic integrity upon UV stress.30
216730122011KIAA0101 interacts with BRCA1 and regulates centrosome number.25
216898612012Overexpression of KIAA0101 predicts poor prognosis in primary lung cancer patients.25
261558912015High Sustained Virologic Response to Daclatasvir Plus Asunaprevir in Elderly and Cirrhotic Patients with Hepatitis C Virus Genotype 1b Without Baseline NS5A Polymorphisms.21
257625142015Structure of p15(PAF)-PCNA complex and implications for clamp sliding during DNA replication and repair.20
162887402006The PCNA-associated factor KIAA0101/p15(PAF) binds the potential tumor suppressor product p33ING1b.15
265753292016KIAA0101 is associated with human renal cell carcinoma proliferation and migration induced by erythropoietin.15

Citation

Shannon Joseph ; Lingbo Hu ; Fiona Simpson

PCLAF (PCNA clamp associated factor)

Atlas Genet Cytogenet Oncol Haematol. 2011-05-01

Online version: http://atlasgeneticsoncology.org/gene/41058/pclaf