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LIFR (leukemia inhibitory factor receptor alpha)

Identity

Other namesCD118
FLJ98106
FLJ99923
LIF-R
SJS2
STWS
SWS
HGNC (Hugo) LIFR
LocusID (NCBI) 3977
Location 5p13.1
Location_base_pair Starts at 38475065 and ends at 38556748 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
  SP: signal peptid
CRH1/CRH2: cytokine receptor homology domain
Ig: Ig-like domain
FNIII: type III fibronectin domain
TM: transmembrane domain
CD: cytoplasmic domain
Description At least 20 exons.
Transcription 10258 pb mRNA; 3293 pb open reading frame.

Protein

Description 1097 amino acids; 190 kDa.
Expression Chondrocytes; osteoblasts; skin fibroblasts placenta; brain; mixed; muscle; lung; embryonic tissue; uterus; stomach; kidney; ovary; liver; prostate; vascular; thyroid; testis; eye; pancreas; adrenal gland; spleen; thymus; trachea; larynx; connective tissue; ear; ascites; ganglia; nerve; tonsil; heart; adipose tissue; intestine; mouth (not in lymphocytes).
Localisation Cytoplasmic membrane.
Function LIFR (gp190) and gp130 compose an heterodimeric receptor. The addition of ligand LIF enhances the dimer formation and signal transduction involves the activation of the JAK/STAT and MAPK cascades.
Homology With the IL6 cytokine family receptors.
LIFR depends of the class I cytokine receptor family. The members of this family contain a conserved domain with ~200 amino acid residues in the amino-terminal half and a WSXWS motif in the carboxy-terminal end.

Mutations

Note 14 distinct mutations were identified in 19 families. An identical frameshift insertion (c.653_654insT) was identified in families from the United Arab Emirates, suggesting a founder effect in that region. 12/14 mutations predicted premature termination of translation (Dagoneau et al., 2004; Corona-Rivera et al., 2009).
 

Implicated in

Entity Stüve-Wiedemann syndrome
Note SWS / SJS2
Disease Stüve-Wiedemann syndrome is a severe autosomal recessive condition characteried by bowing of the long bones, with cortical thickening, flared metaphyses with coarsened trabecular pattern, camptodactyly, respiratory distress, feeding difficulties, and hyperthermic episodes responsible for early lethality.
  
Entity ACTH-secreting pituitary adenomas
Disease LIFR was expressed in all ACTH-secreting adenomas and non functioning adenomas. No LIFR mutations were found (Heutling et al., 2004).
  
Entity Pancreatic carcinoma
Disease Pancreatic carcinoma cells expressed LIF, LIFR and gP130 mRNAs. LIF upregulates LIFR mRNA expression and antisense oligonucleotide of LIFR suppresses cell proliferation. The results may be of potential value in immunotherapy for pancreatic carcinoma (Kamohara et al., 2007).
  
Entity Neuroblastoma
Disease Growth factors (EGF, FGF) cause a decrease in LIFR levels in neuroblastoma cells that correlated with the activation of extracellular signal-regulated kinase (Erk1/Erk2). The decrease in LIFR is due to an increase in the rate of protein degradation and is blocked by inhibitors of lysosomal degradation (Port et al., 2008).
  
Entity Glioblastoma multiforme (GBM)
Disease Glioblastoma multiforme (GBM) represents an extremely chemoresistant tumour type. The authors analysed the expression of selected neural and non-neural differentiation markers including LIFR. They found that LIFR expression was associated with chemosensitivity of tumour cells to several chemotherapeutic agents. However, its role in glioma pathogenesis and response to therapy remains to be elucidated.
  

External links

Nomenclature
HGNC (Hugo)LIFR   6597
Entrez_Gene (NCBI)LIFR  3977  leukemia inhibitory factor receptor alpha
Cards
AtlasLIFRID410ch5p13
GeneCards (Weizmann)LIFR
Ensembl (Hinxton)ENSG00000113594 [Gene_View]  chr5:38475065-38556748 [Contig_View]  LIFR [Vega]
AceView (NCBI)LIFR
Genatlas (Paris)LIFR
SOURCE (Stanford)NM_001127671 NM_002310
Genomic and cartography
GoldenPath (UCSC)LIFR  -  5p13.1   chr5:38475065-38556748 -  5p13-p12   [Description]    (hg19-Feb_2009)
EnsemblLIFR - 5p13-p12 [CytoView]
Mapping of homologs : NCBILIFR [Mapview]
OMIM151443   601559   
Gene and transcription
Genbank (Entrez)AK290059 AK308158 AK309882 BC141428 BC153096
RefSeq transcript (SRS)NM_001127671 NM_002310
RefSeq transcript (Entrez)NM_001127671 NM_002310
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NG_011817 NT_006576 NW_001838933 NW_004078022
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NG_011817 NT_006576 NW_001838933 NW_004078022
Consensus coding sequences : CCDS (NCBI)LIFR
Cluster EST : UnigeneHs.133421 [ SRS ] Hs.133421 [ NCBI ]
CGAP (NCI)Hs.133421
Alternative Splicing : Fast-db (Paris)GSHG0024735
Alternative Splicing GalleryENSG00000113594
Gene ExpressionLIFR [ NCBI-GEO ]   LIFR [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42702 (SRS) P42702 (Uniprot)
NextProtP42702
With graphics : InterProP42702
Splice isoforms : SwissVarP42702(Swissvar)
Domaine pattern : Prosite (SRS)FN3 (PS50853)    HEMATOPO_REC_L_F2 (PS01353)   
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    HEMATOPO_REC_L_F2 (PS01353)   
Domains : Interpro (SRS)Fibronectin_type3    Hematopoietin_rcpt_Gp130_CS    Ig-like_fold   
Domains : Interpro (EBI)Fibronectin_type3    Hematopoietin_rcpt_Gp130_CS    Ig-like_fold   
Related proteins : CluSTrP42702
Domain families : Pfam (SRS)fn3 (PF00041)   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
DMDM3977
Blocks (Seattle)P42702
PDB (SRS)3E0G   
PDB (PDBSum)3E0G   
PDB (IMB)3E0G   
PDB (RSDB)3E0G   
Human Protein AtlasENSG00000113594
HPRD01048
IPIIPI00444272   IPI00967745   IPI00968193   IPI00966270   
Protein Interaction databases
DIP (DOE-UCLA)P42702
IntAct (EBI)P42702
FunCoupENSG00000113594
REACTOMELIFR
Protein Interaction Database3977
BioGRIDLIFR
InParanoidP42702
Interologous Interaction database P42702
IntegromeDBLIFR
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LIFR
SNP (GeneSNP Utah)LIFR
SNP : HGBaseLIFR
Genetic variants : HAPMAPLIFR
Cancer Gene: CensusLIFR 
Somatic Mutations in Cancer : COSMICLIFR 
CONAN: Copy Number AnalysisLIFR 
Rearrangement : COSMICLIFR [5p13.1]  -  PLAG1 [8q12.1]
Translocation Breakpoints in Cancer : TICdbLIFR 
Mutations and Diseases : HGMDLIFR
OMIM151443    601559   
GENETests151443    601559   
Disease Genetic AssociationLIFR
Huge Navigator LIFR [HugePedia]  LIFR [HugeCancerGEM]
Genomic VariantsLIFR  LIFR [DGVbeta]
snp3D : Map Gene to Disease3977
General knowledge
Homologs : HomoloGeneLIFR
Homology/Alignments : Family Browser (UCSC)LIFR
Phylogenetic Trees/Animal Genes : TreeFamLIFR
Chemical/Protein Interactions : CTD3977
Chemical/Pharm GKB GenePA30371
Clinical trialLIFR
Cancer Resource (Charite)ENSG00000113594
Ontology : AmiGOciliary neurotrophic factor receptor activity  leukemia inhibitory factor receptor activity  leukemia inhibitory factor receptor activity  oncostatin-M receptor activity  ciliary neurotrophic factor receptor binding  extracellular region  integral to plasma membrane  cell surface receptor signaling pathway  positive regulation of cell proliferation  cytokine-mediated signaling pathway  growth factor binding  cytokine binding  organ regeneration  response to cytokine stimulus  oncostatin-M-mediated signaling pathway  neuron projection morphogenesis  leukemia inhibitory factor signaling pathway  ciliary neurotrophic factor-mediated signaling pathway  
Ontology : EGO-EBIciliary neurotrophic factor receptor activity  leukemia inhibitory factor receptor activity  leukemia inhibitory factor receptor activity  oncostatin-M receptor activity  ciliary neurotrophic factor receptor binding  extracellular region  integral to plasma membrane  cell surface receptor signaling pathway  positive regulation of cell proliferation  cytokine-mediated signaling pathway  growth factor binding  cytokine binding  organ regeneration  response to cytokine stimulus  oncostatin-M-mediated signaling pathway  neuron projection morphogenesis  leukemia inhibitory factor signaling pathway  ciliary neurotrophic factor-mediated signaling pathway  
Pathways : KEGGCytokine-cytokine receptor interactionJak-STAT signaling pathway
Other databases
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
PubGeneLIFR
iHOPLIFR

Bibliography

Congenital bowing of long bones--occurrence in two sisters.
Stuve A, Wiedemann HR.
Z Kinderheilkd. 1971;111(3):184-92.
PMID 5157649
 
Leukemia inhibitory factor receptor is structurally related to the IL-6 signal transducer, gp130.
Gearing DP, Thut CJ, VandeBos T, Gimpel SD, Delaney PB, King J, Price V, Cosman D, Beckmann MP.
EMBO J. 1991 Oct;10(10):2839-48.
PMID 1915266
 
The leukemia inhibitory factor receptor (LIFR) gene is located within a cluster of cytokine receptor loci on mouse chromosome 15 and human chromosome 5p12-p13.
Gearing DP, Druck T, Huebner K, Overhauser J, Gilbert DJ, Copeland NG, Jenkins NA.
Genomics. 1993 Oct;18(1):148-50.
PMID 8276403
 
Essential function of LIF receptor in motor neurons.
Li M, Sendtner M, Smith A.
Nature. 1995 Dec 14;378(6558):724-7.
PMID 7501019
 
Targeted disruption of the low-affinity leukemia inhibitory factor receptor gene causes placental, skeletal, neural and metabolic defects and results in perinatal death.
Ware CB, Horowitz MC, Renshaw BR, Hunt JS, Liggitt D, Koblar SA, Gliniak BC, McKenna HJ, Papayannopoulou T, Thoma B, et al.
Development. 1995 May;121(5):1283-99.
PMID 7789261
 
Structure of the gene encoding the human differentiation-stimulating factor/leukemia inhibitory factor receptor.
Tomida M, Gotoh O.
J Biochem. 1996 Jul;120(1):201-5.
PMID 8864865
 
Distinct roles for leukemia inhibitory factor receptor alpha-chain and gp130 in cell type-specific signal transduction.
Starr R, Novak U, Willson TA, Inglese M, Murphy V, Alexander WS, Metcalf D, Nicola NA, Hilton DJ, Ernst M.
J Biol Chem. 1997 Aug 8;272(32):19982-6.
PMID 9242667
 
Clinical homogeneity of the Stuve-Wiedemann syndrome and overlap with the Schwartz-Jampel syndrome type 2.
Cormier-Daire V, Superti-Furga A, Munnich A, Lyonnet S, Rustin P, Delezoide AL, De Lonlay P, Giedion A, Maroteaux P, Le Merrer M.
Am J Med Genet. 1998 Jun 30;78(2):146-9.
PMID 9674905
 
Expression of leukemia inhibitory factor (LIF)/interleukin-6 family cytokines and receptors during in vitro osteogenesis: differential regulation by dexamethasone and LIF.
Liu F, Aubin JE, Malaval L.
Bone. 2002 Jul;31(1):212-9.
PMID 12110437
 
Mutations in the immunoglobulin-like domain of gp190, the leukemia inhibitory factor (LIF) receptor, increase or decrease its affinity for LIF.
Bitard J, Daburon S, Duplomb L, Blanchard F, Vuisio P, Jacques Y, Godard A, Heath JK, Moreau JF, Taupin JL.
J Biol Chem. 2003 May 2;278(18):16253-61. Epub 2003 Feb 24.
PMID 12601009
 
The unsolved enigmas of leukemia inhibitory factor.
Metcalf D.
Stem Cells. 2003;21(1):5-14.
PMID 12529546
 
Null leukemia inhibitory factor receptor (LIFR) mutations in Stuve-Wiedemann/Schwartz-Jampel type 2 syndrome.
Dagoneau N, Scheffer D, Huber C, Al-Gazali LI, Di Rocco M, Godard A, Martinovic J, Raas-Rothschild A, Sigaudy S, Unger S, Nicole S, Fontaine B, Taupin JL, Moreau JF, Superti-Furga A, Le Merrer M, Bonaventure J, Munnich A, Legeai-Mallet L, Cormier-Daire V.
Am J Hum Genet. 2004 Feb;74(2):298-305. Epub 2004 Jan 21.
PMID 14740318
 
Mutation analysis of leukemia inhibitory factor-receptor (LIF-R) in ACTH-secreting pituitary adenomas.
Heutling D, Dieterich KD, Buchfelder M, Lehnert H.
Exp Clin Endocrinol Diabetes. 2004 Sep;112(8):458-61.
PMID 15372367
 
Leukemia inhibitory factor functions as a growth factor in pancreas carcinoma cells: Involvement of regulation of LIF and its receptor expression.
Kamohara H, Ogawa M, Ishiko T, Sakamoto K, Baba H.
Int J Oncol. 2007 Apr;30(4):977-83.
PMID 17332938
 
Transregulation of leukemia inhibitory (corrected) factor receptor expression and function by growth factors in neuroblastoma cells.
Port MD, Laszlo GS, Nathanson NM.
J Neurochem. 2008 Aug;106(4):1941-51. Epub 2008 Jul 4.
PMID 18624908
 
Flow cytometry analysis of neural differentiation markers expression in human glioblastomas may predict their response to chemotherapy.
Balik V, Mirossay P, Bohus P, Sulla I, Mirossay L, Sarissky M.
Cell Mol Neurobiol. 2009 Sep;29(6-7):845-58. Epub 2009 Mar 14.
PMID 19288188
 
Abnormal oral-pharyngeal swallowing as cause of morbidity and early death in Stuve-Wiedemann syndrome.
Corona-Rivera JR, Cormier-Daire V, Dagoneau N, Coello-Ramirez P, Lopez-Marure E, Romo-Huerta CO, Silva-Baez H, Aguirre-Salas LM, Estrada-Solorio MI.
Eur J Med Genet. 2009 Jul-Aug;52(4):242-6. Epub 2009 Apr 14.
PMID 19371797
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written12-2009Nathalie Dagoneau, Valérie Cormier-Daire
Department of Genetics and INSERM U781, Paris Descartes University, Tour Lavoisier, Hopital Necker Enfants Malades, 149 rue de Sevres, 75015 Paris, France

Citation

This paper should be referenced as such :
Dagoneau N, Cormier-Daire V . LIFR (leukemia inhibitory factor receptor alpha). Atlas Genet Cytogenet Oncol Haematol. December 2009 .
URL : http://AtlasGeneticsOncology.org/Genes/LIFRID410ch5p13.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/44857/1/12-2009-LIFRID410ch5p13.pdf   [ Bibliographic record ]

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indexed on : Wed May 1 12:54:40 CEST 2013

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