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MDM2 (transformed mouse 3T3 cell double minute 2, p53 binding protein)

Identity

Other namesHDMX
hdm2
HGNC (Hugo) MDM2
LocusID (NCBI) 4193
Location 12q15
Location_base_pair Starts at 69201971 and ends at 69239320 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description The gene encompasses 33 kb of DNA; 12 exons.
Transcription 2.3 kb nucleotides mRNA. 1476 b open reading frame.

Protein

Description 491 amino acids; 90 kDa protein.
Expression Expression of MDM2 during embryogenesis was studied in mice. During 14.5 to 18.5 days of prenatal development, the nasal respiratory epithelium expresses high levels of MDM2 RNA and protein in both wild type and p53 null embryos. MDM2 expression during development is tissue-specific and is independent of p53. The mdm2 basal mRNA expression appears relatively moderate in most organs in adult mice.
MDM2 gene was overexpressed in some types of leukemias and lymphomas. Overexpression was significantly more frequent in the low-grade type of B-cell non-Hodgkin's lymphoma (B-NHL) than in the intermediate/high grade types of lymphoma and the overexpression was also significantly more frequent in the advanced rather than the earlier stages of B-cell chronic lymphocytic leukemia (B-CLL).
Localisation MDM2 protein was found in nucleus and cytoplasm.
Function MDM2 was originally cloned from transformed Balb/c3T3 cell line called 3T3DM and was identified as an amplified oncogene in murine cell lines. MDM2 was shown to be amplified in approximately 30% of osteosarcomas and soft tissue tumors and was subsequently found to act as an ubiquitin ligase promoting proteasome dependent degradation of p53. MDM2 is also a transcriptional target of p53 such that p53 activity controls the expression and protein level of its own negative regulator, providing for an elegant feedback loop. MDM2 inhibits the G1 arrest and apoptosis functions of the p53 tumor suppressor protein. The MDM2-p53 complex also inhibits p53 mediated transactivation.
MDM2 knockout mouse embryos died during development and deletion of the p53 gene rescues MDM2 null embryos. These studies suggested that p53 is lethal in the absence of MDM2 during mouse development and MDM2 is a critical regulator to control p53 activity.
In addition, MDM2 involves nuclear export of p53 protein. Interaction between the p53 and MDM2 is not sufficient to mediate p53 degradation. The p53­MDM2 complex must be shuttled from the nucleus to the cytoplasm in order for p53 degradation.
Besides, the MDM2 protein also promotes RB (retinoblastoma) protein degradation in a proteasome-dependent manner in human tumor cell lines. MDM2 overexpression contributes to cancer development in part by destabilizing RB.
Interaction between MDM2 and the tumor suppressor genes p53 and Rb lead to deregulate cell proliferation and apoptosis. MDM2 is a key factor in human tumorigenesis.
Both MDM2 and Pirh2 (RCHY1) proteins are p53 ubiquitin-protein E3 ligases promoting for degradation of p53 protein. However, MDM2 operates in a distinct manner from Pirh2 in response to DNA damage in cancer cells. MDM2 protein is reduced or absent in the p53 null cells compared to the p53 positive cells, Whereas, Pirh2 expression is not affected by the status of p53.
A single nucleotide polymorphism (SNP309) found in the MDM2 promoter is shown to increase the affinity of the transcriptional activator Sp1, resulting in higher levels of MDM2 RNA and protein and the subsequent attenuation of the p53 pathway. In humans, SNP309 is shown to associate with accelerated tumor formation in both hereditary and sporadic cancers.
Homology The MDM2 gene has been identified in various organisms including mammals, amphibians and fishes. It belongs to the ring finger ubiquitin protein E3 ligase family, containing Conserved RING-finger Domain.

Mutations

Note MDM2 mutations are uncommon. Point mutations were reported in human cancers.

Implicated in

Entity Soft tissue tumors and osteosarcomas.
Disease A set of data of MDM2 amplification based on 3889 samples from tumors or xenografts from 28 tumor types from previously published sources was collected. The overall frequency of MDM2 amplification in these human tumors was 7%. Gene amplification was observed in 19 tumor types, with the highest frequency observed in soft tissue tumors (20%), osteosarcomas (16%) and esophageal carcinomas (13%).
Oncogenesis MDM2 is amplified in many cancers. Because the MDM2 is an ubiquitin-protein ligase that promotes p53 protein degradation, the increased MDM2 protein could play an important role in tumorigenesis, especially in the development of soft tissue tumors, osteosarcomas and esophageal carcinomas.
  

External links

Nomenclature
HGNC (Hugo)MDM2   6973
Entrez_Gene (NCBI)MDM2  4193  Mdm2, p53 E3 ubiquitin protein ligase homolog (mouse)
Cards
AtlasMDM2ID115ch12q15
GeneCards (Weizmann)MDM2
Ensembl (Hinxton)ENSG00000135679 [Gene_View]  chr12:69201971-69239320 [Contig_View]  MDM2 [Vega]
AceView (NCBI)MDM2
Genatlas (Paris)MDM2
SOURCE (Stanford)NM_001145336 NM_001145337 NM_001145339 NM_001145340 NM_002392 NM_006878 NM_006879 NM_006880 NM_006881 NM_006882 NM_032739
Genomic and cartography
GoldenPath (UCSC)MDM2  -  12q15   chr12:69201971-69239320 +  12q13-q14   [Description]    (hg19-Feb_2009)
EnsemblMDM2 - 12q13-q14 [CytoView]
Mapping of homologs : NCBIMDM2 [Mapview]
OMIM164785   614401   
Gene and transcription
Genbank (Entrez)AA708958 AF092843 AF092844 AF092845 AF201370
RefSeq transcript (SRS)NM_001145336 NM_001145337 NM_001145339 NM_001145340 NM_002392 NM_006878 NM_006879 NM_006880 NM_006881 NM_006882 NM_032739
RefSeq transcript (Entrez)NM_001145336 NM_001145337 NM_001145339 NM_001145340 NM_002392 NM_006878 NM_006879 NM_006880 NM_006881 NM_006882 NM_032739
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NG_016708 NT_029419 NW_001838060 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_016708 NT_029419 NW_001838060 NW_004078075
Consensus coding sequences : CCDS (NCBI)MDM2
Cluster EST : UnigeneHs.733536 [ SRS ] Hs.733536 [ NCBI ]
CGAP (NCI)Hs.733536
Alternative Splicing : Fast-db (Paris)GSHG0006826
Alternative Splicing GalleryENSG00000135679
Gene ExpressionMDM2 [ NCBI-GEO ]   MDM2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00987 (SRS) Q00987 (Uniprot)
NextProtQ00987
With graphics : InterProQ00987
Splice isoforms : SwissVarQ00987(Swissvar)
Domaine pattern : Prosite (SRS)ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)p53_neg-reg_MDM_2/4    SWIB_MDM2_domain    Znf_RanBP2    Znf_RING   
Domains : Interpro (EBI)p53_neg-reg_MDM_2/4    SWIB_MDM2_domain    Znf_RanBP2    Znf_RING   
Related proteins : CluSTrQ00987
Domain families : Pfam (SRS)SWIB (PF02201)    zf-RanBP (PF00641)   
Domain families : Pfam (Sanger)SWIB (PF02201)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam02201    pfam00641   
Domain families : Smart (EMBL)RING (SM00184)  
DMDM4193
Blocks (Seattle)Q00987
PDB (SRS)1RV1    1T4E    1T4F    1YCR    1Z1M    2AXI    2C6A    2C6B    2F1Y    2FOP    2GV2    2HDP    2VJE    2VJF    3EQS    3G03    3IUX    3IWY    3JZK    3JZR    3JZS    3LBK    3LBL    3LNJ    3LNZ    3TJ2    3TPX    3TU1    3V3B    3VBG    4DIJ    4ERE    4ERF   
PDB (PDBSum)1RV1    1T4E    1T4F    1YCR    1Z1M    2AXI    2C6A    2C6B    2F1Y    2FOP    2GV2    2HDP    2VJE    2VJF    3EQS    3G03    3IUX    3IWY    3JZK    3JZR    3JZS    3LBK    3LBL    3LNJ    3LNZ    3TJ2    3TPX    3TU1    3V3B    3VBG    4DIJ    4ERE    4ERF   
PDB (IMB)1RV1    1T4E    1T4F    1YCR    1Z1M    2AXI    2C6A    2C6B    2F1Y    2FOP    2GV2    2HDP    2VJE    2VJF    3EQS    3G03    3IUX    3IWY    3JZK    3JZR    3JZS    3LBK    3LBL    3LNJ    3LNZ    3TJ2    3TPX    3TU1    3V3B    3VBG    4DIJ    4ERE    4ERF   
PDB (RSDB)1RV1    1T4E    1T4F    1YCR    1Z1M    2AXI    2C6A    2C6B    2F1Y    2FOP    2GV2    2HDP    2VJE    2VJF    3EQS    3G03    3IUX    3IWY    3JZK    3JZR    3JZS    3LBK    3LBL    3LNJ    3LNZ    3TJ2    3TPX    3TU1    3V3B    3VBG    4DIJ    4ERE    4ERF   
Human Protein AtlasENSG00000135679
HPRD01272
IPIIPI00789663   IPI00944540   IPI00218551   IPI00218552   IPI00218553   IPI00295694   IPI00791322   IPI00969213   IPI00410597   IPI00168602   IPI00383012   IPI00472854   IPI01021805   IPI01018751   IPI00386544   IPI00386041   IPI00472971   IPI00103724   IPI00041320   IPI00103723   IPI00984631   IPI00853596   IPI00978667   IPI00386541   IPI00748589   IPI00386543   IPI00973836   IPI00973912   IPI00025490   IPI01015017   IPI00384422   IPI01011784   IPI00798285   IPI01011407   IPI01010971   IPI00981581   
Protein Interaction databases
DIP (DOE-UCLA)Q00987
IntAct (EBI)Q00987
FunCoupENSG00000135679
REACTOMEMDM2
Protein Interaction Database4193
BioGRIDMDM2
InParanoidQ00987
Interologous Interaction database Q00987
IntegromeDBMDM2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MDM2
SNP (GeneSNP Utah)MDM2
SNP : HGBaseMDM2
Genetic variants : HAPMAPMDM2
Cancer Gene: CensusMDM2 
Somatic Mutations in Cancer : COSMICMDM2 
CONAN: Copy Number AnalysisMDM2 
Mutations and Diseases : HGMDMDM2
OMIM164785    614401   
GENETests164785    614401   
Disease Genetic AssociationMDM2
Huge Navigator MDM2 [HugePedia]  MDM2 [HugeCancerGEM]
Genomic VariantsMDM2  MDM2 [DGVbeta]
snp3D : Map Gene to Disease4193
General knowledge
Homologs : HomoloGeneMDM2
Homology/Alignments : Family Browser (UCSC)MDM2
Phylogenetic Trees/Animal Genes : TreeFamMDM2
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.- [ Enzyme-SRS ]   6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD4193
Chemical/Pharm GKB GenePA30718
Drug Sensitivity MDM2
Clinical trialMDM2
Cancer Resource (Charite)ENSG00000135679
Ontology : AmiGOcell cycle checkpoint  negative regulation of transcription from RNA polymerase II promoter  p53 binding  ubiquitin-protein ligase activity  ubiquitin-protein ligase activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  nucleolus  cytoplasm  cytosol  plasma membrane  protein complex assembly  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  traversing start control point of mitotic cell cycle  epidermal growth factor receptor signaling pathway  synaptic transmission  zinc ion binding  positive regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  protein ubiquitination  nuclear body  peptidyl-lysine modification  virus-host interaction  enzyme binding  endocytic vesicle membrane  protein destabilization  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  protein localization to nucleus  regulation of protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  identical protein binding  negative regulation of apoptotic process  protein complex  negative regulation of DNA damage response, signal transduction by p53 class mediator  establishment of protein localization  negative regulation of transcription, DNA-dependent  positive regulation of mitotic cell cycle  response to antibiotic  metal ion binding  nerve growth factor receptor signaling pathway  phosphatidylinositol-mediated signaling  negative regulation of cell cycle arrest  cellular response to hypoxia  scaffold protein binding  
Ontology : EGO-EBIcell cycle checkpoint  negative regulation of transcription from RNA polymerase II promoter  p53 binding  ubiquitin-protein ligase activity  ubiquitin-protein ligase activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  nucleolus  cytoplasm  cytosol  plasma membrane  protein complex assembly  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  traversing start control point of mitotic cell cycle  epidermal growth factor receptor signaling pathway  synaptic transmission  zinc ion binding  positive regulation of cell proliferation  fibroblast growth factor receptor signaling pathway  protein ubiquitination  nuclear body  peptidyl-lysine modification  virus-host interaction  enzyme binding  endocytic vesicle membrane  protein destabilization  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  protein localization to nucleus  regulation of protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  identical protein binding  negative regulation of apoptotic process  protein complex  negative regulation of DNA damage response, signal transduction by p53 class mediator  establishment of protein localization  negative regulation of transcription, DNA-dependent  positive regulation of mitotic cell cycle  response to antibiotic  metal ion binding  nerve growth factor receptor signaling pathway  phosphatidylinositol-mediated signaling  negative regulation of cell cycle arrest  cellular response to hypoxia  scaffold protein binding  
Pathways : BIOCARTACell Cycle: G2/M Checkpoint [Genes]    Hypoxia and p53 in the Cardiovascular system [Genes]    ATM Signaling Pathway [Genes]    Tumor Suppressor Arf Inhibits Ribosomal Biogenesis [Genes]    Sumoylation by RanBP2 Regulates Transcriptional Repression [Genes]    HIV-I Nef: negative effector of Fas and TNF [Genes]    CTCF: First Multivalent Nuclear Factor [Genes]    p53 Signaling Pathway [Genes]   
Pathways : KEGGCell cycle
Other databases
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
PubGeneMDM2
iHOPMDM2

Bibliography

Molecular analysis and chromosomal mapping of amplified genes isolated from a transformed mouse 3T3 cell line.
Cahilly-Snyder L, Yang-Feng T, Francke U, George DL
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PMID 3474784
 
Tumorigenic potential associated with enhanced expression of a gene that is amplified in a mouse tumor cell line.
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PMID 2026149
 
The mdm-2 oncogene product forms a complex with the p53 protein and inhibits p53-mediated transactivation.
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PMID 1535557
 
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PMID 1614537
 
mdm2 expression is induced by wild type p53 activity.
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PMID 8440237
 
Oncoprotein MDM2 conceals the activation domain of tumour suppressor p53.
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PMID 8479525
 
The mdm-2 gene is induced in response to UV light in a p53-dependent manner.
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mdm-2 inhibits the G1 arrest and apoptosis functions of the p53 tumor suppressor protein.
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Overexpression of the MDM2 oncogene in leukemia and lymphoma.
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Mdm2 promotes the rapid degradation of p53.
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Oncoprotein MDM2 is a ubiquitin ligase E3 for tumor suppressor p53.
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Regulation of p53 stability by Mdm2.
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Point mutations and nucleotide insertions in the MDM2 zinc finger structure of human tumours.
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PMID 9227342
 
Nuclear export is required for degradation of endogenous p53 by MDM2 and human papillomavirus E6.
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MDM2 expression during mouse embryogenesis and the requirement of p53.
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PMID 10359817
 
A single nucleotide polymorphism in the MDM2 promoter attenuates the p53 tumor suppressor pathway and accelerates tumor formation in humans.
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PMID 15550242
 
MDM2 promotes proteasome-dependent ubiquitin-independent degradation of retinoblastoma protein.
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Differential response between the p53 ubiquitin-protein ligases Pirh2 and MdM2 following DNA damage in human cancer cells.
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PMID 16934800
 
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Contributor(s)

Written12-2006Wenrui Duan, Miguel A Villalona-Calero

Citation

This paper should be referenced as such :
Duan W, Villalona-Calero MA . MDM2 (transformed mouse 3T3 cell double minute 2, p53 binding protein). Atlas Genet Cytogenet Oncol Haematol. December 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/MDM2ID115ch12q15.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/38406/1/12-2006-MDM2ID115ch12q15.pdf   [ Bibliographic record ]

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indexed on : Wed May 1 13:06:54 CEST 2013

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