MIR449A (microRNA 449a)
2012-10-01 Cristina Gallinas Suazo  , Muriel Lizé   AffiliationDepartment of Molecular Oncology - University of Goettingen, Goettingens Centre for Molecular Biosciences (GZMB), Ernst Caspari Haus, Justus-von-Liebig-Weg 11, D-37077 Goettingen, Germany
Identity

DNA/RNA

Description
Sequence miR-449a: uggcaguguauuguuagcuggu (22 bp)
Sequence miR-449b: aggcaguguauuguuagcuggc (22 bp)
Sequence miR-449c: uaggcaguguauugcuagcggcugu (25 bp)
They regulate gene expression post-transcriptionally by mRNA degradation or translational repression (Esquela-Kerscher and Slack, 2006).
Transcription
The synthesis of miRNAs starts with the primary transcription by the RNA polymerase II (Lee et al., 2004) in the nucleus of a capped and polyadenylated precursor named pri-miRNA. The pri-miRNA of miR-449a is 91 base pairs long, the one of miR-449b is 97 bp in and pri-miR-449c is 92 bp in. The precursors are then further processed by the nucleases Drosha and Pasha, which are able to recognize and cut the stem-loop structure to generate the pre-miRNA. Finally, these pre-miRNAs are exported into the cytoplasm and are cleaved by the ribonuclease Dicer (Lund and Dahlberg, 2006) to get the mature 22-25 bp miR-449. The mature microRNA recognizes its target mostly via the "seed sequence", and when loaded into the RNA induced silencing complex (RISC), they lead to the degradation or the inhibition of the translation of the targeted mRNA (Hammond et al., 2000).
Expression
miR-449 expression is strongly induced during mucociliary differentiation (Lizé et al., 2010; Marcet et al., 2011). miR-449 is down-regulated in various cancers, most probably through epigenetic silencing (Yang et al., 2009; Noonan et al., 2009; Lizé et al., 2010; Noonan et al., 2010; Bou Kheir et al., 2011; Buurman et al., 2012; Chen et al., 2012). miR-449 is E2F1- and DNA damage responsive and negatively regulates the E2F pathway both through the direct targeting of E2F transcription factors and indirectly through the downregulation of cyclin-dependent kinases (CDKs) either directly or through the induction of the CDK-inhibitor p21 (Yang et al., 2009; Lizé et al., 2010). miR-449s promoter is repressed by Interleukin 13 (IL-13), leading to an increase in Notch expression and mucociliary differentiation alteration (Solberg et al., 2012). MiR-449 targets: cyclin dependent kinase 6 (CDK6), cell division cycle 25 homolog A (CDC25A); and histone deacetylase 1 (HDAC1), cyclin D1 (CCND1), cyclin E2 (CCNE2), SIRT1, Delta-like 1 (DLL1), E2F transcription factor 5 (E2F5), Geminin (GMNN), MET protooncogene (MET), v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived (N-myc), Drosophila notch homolog 1 (Notch1) (Bommer et al., 2007; Sun et al., 2008; Noonan et al., 2009; Redshaw et al., 2009; Yang et al., 2009; Lizé et al., 2010; Bou Kheir et al., 2011; Buechner et al., 2011; Lizé et al., 2011; Marcet et al., 2011).
Localisation
miR-449 is expressed at high levels in tissues containing ciliated cells, especially choroid plexus (Redshaw et al., 2009), lung, testis and trachea (Lizé et al., 2010; Marcet et al., 2011; Bao et al., 2012). It is expressed specifically in multiciliated cells (Marcet et al., 2011).
Function
miR-449 is a strong inducer of cell cycle arrest (including senescence) and apoptosis in tumor cell lines (Noonan et al., 2009; Yang et al., 2009; Lizé et al., 2010; Noonan et al., 2010; Bou Kheir et al., 2011). It is also involved in mucociliary differentiation (Lizé et al., 2010; Marcet et al., 2011).
miR-449 regulates several pathways (reviewed in Lizé et al., 2011) including Notch (Capuano et al., 2011; Marcet et al., 2011), p53 (Lizé et al., 2010), E2F-Rb (Redshaw et al., 2009; Yang et al., 2009; Lizé et al., 2010; Noonan et al., 2010; Bao et al., 2012), Wnt (Iliopoulos et al., 2009) and the cell cycle (Noonan et al., 2009; Yang et al., 2009; Lizé et al., 2010; Noonan et al., 2010; Bou Kheir et al., 2011).
Proteins
Note
Implicated in
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 22570483 | 2012 | MicroRNA-449 and microRNA-34b/c function redundantly in murine testes by targeting E2F transcription factor-retinoblastoma protein (E2F-pRb) pathway. | Bao J et al |
| 17656095 | 2007 | p53-mediated activation of miRNA34 candidate tumor-suppressor genes. | Bommer GT et al |
| 21418558 | 2011 | miR-449 inhibits cell proliferation and is down-regulated in gastric cancer. | Bou Kheir T et al |
| 21654684 | 2011 | Tumour-suppressor microRNAs let-7 and mir-101 target the proto-oncogene MYCN and inhibit cell proliferation in MYCN-amplified neuroblastoma. | Buechner J et al |
| 22641068 | 2012 | Histone deacetylases activate hepatocyte growth factor signaling by repressing microRNA-449 in hepatocellular carcinoma cells. | Buurman R et al |
| 21761366 | 2010 | CTNNB1 gene mutations, pituitary transcription factors, and MicroRNA expression involvement in the pathogenesis of adamantinomatous craniopharyngiomas. | Campanini ML et al |
| 22194996 | 2011 | MicroRNA-449a overexpression, reduced NOTCH1 signals and scarce goblet cells characterize the small intestine of celiac patients. | Capuano M et al |
| 22266187 | 2012 | MicroRNA-449a acts as a tumor suppressor in human bladder cancer through the regulation of pocket proteins. | Chen H et al |
| 16557279 | 2006 | Oncomirs - microRNAs with a role in cancer. | Esquela-Kerscher A et al |
| 17991681 | 2008 | miRBase: tools for microRNA genomics. | Griffiths-Jones S et al |
| 10749213 | 2000 | An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. | Hammond SM et al |
| 21071411 | 2011 | miRTarBase: a database curates experimentally validated microRNA-target interactions. | Hsu SD et al |
| 19351815 | 2009 | MicroRNA signature of primary pigmented nodular adrenocortical disease: clinical correlations and regulation of Wnt signaling. | Iliopoulos D et al |
| 21037258 | 2011 | miRBase: integrating microRNA annotation and deep-sequencing data. | Kozomara A et al |
| 15372072 | 2004 | MicroRNA genes are transcribed by RNA polymerase II. | Lee Y et al |
| 19087325 | 2008 | An expression meta-analysis of predicted microRNA targets identifies a diagnostic signature for lung cancer. | Liang Y et al |
| 21088493 | 2010 | MicroRNA-449a levels increase by several orders of magnitude during mucociliary differentiation of airway epithelia. | Lizé M et al |
| 21857159 | 2011 | MicroRNA-449 in cell fate determination. | Lizé M et al |
| 19960022 | 2010 | E2F1-inducible microRNA 449a/b suppresses cell proliferation and promotes apoptosis. | Lizé M et al |
| 17381281 | 2006 | Substrate selectivity of exportin 5 and Dicer in the biogenesis of microRNAs. | Lund E et al |
| 22168593 | 2012 | Microribonucleic acids and gastric cancer. | Ma YY et al |
| 21602795 | 2011 | Control of vertebrate multiciliogenesis by miR-449 through direct repression of the Delta/Notch pathway. | Marcet B et al |
| 16582102 | 2006 | The expression profile of microRNAs in mouse embryos. | Mineno J et al |
| 20948989 | 2010 | miR-449a causes Rb-dependent cell cycle arrest and senescence in prostate cancer cells. | Noonan EJ et al |
| 19056356 | 2009 | microRNA-449 is a putative regulator of choroid plexus development and function. | Redshaw N et al |
| 22955319 | 2012 | Airway epithelial miRNA expression is altered in asthma. | Solberg OD et al |
| 18406353 | 2008 | Downregulation of CCND1 and CDK6 by miR-34a induces cell cycle arrest. | Sun F et al |
| 22135297 | 2012 | TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. | Vergoulis T et al |
| 20859756 | 2010 | Differential miRNA expression and their target genes between NGX6-positive and negative colon cancer cells. | Wang XY et al |
| 16566924 | 2006 | Identification of new central nervous system specific mouse microRNAs. | Wheeler G et al |
| 19077565 | 2009 | Expression profile of mammalian microRNAs in endometrioid adenocarcinoma. | Wu W et al |
| 19833767 | 2009 | miR-449a and miR-449b are direct transcriptional targets of E2F1 and negatively regulate pRb-E2F1 activity through a feedback loop by targeting CDK6 and CDC25A. | Yang X et al |
Other Information
Locus ID:
NCBI: 554213
MIM: 613131
HGNC: 27645
Ensembl: ENSG00000198983
miRBase:
Variants:
dbSNP: 554213
ClinVar: 554213
TCGA: ENSG00000198983
COSMIC: MIR449A
RNA/Proteins
Pathways
| Pathway | Source | External ID |
|---|---|---|
| MicroRNAs in cancer | KEGG | hsa05206 |
| MicroRNAs in cancer | KEGG | ko05206 |
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 38215077 | 2024 | AGO2-RIP-Seq reveals miR-34/miR-449 cluster targetome in sinonasal cancers. | 0 |
| 38215077 | 2024 | AGO2-RIP-Seq reveals miR-34/miR-449 cluster targetome in sinonasal cancers. | 0 |
| 36695693 | 2023 | miR-449a ameliorates acute rejection after liver transplantation via targeting procollagen-lysine1,2-oxoglutarate5-dioxygenase 1 in macrophages. | 1 |
| 36695693 | 2023 | miR-449a ameliorates acute rejection after liver transplantation via targeting procollagen-lysine1,2-oxoglutarate5-dioxygenase 1 in macrophages. | 1 |
| 34647653 | 2022 | MiRNome analysis identifying miR-205 and miR-449a as biomarkers of disease progression in intestinal-type sinonasal adenocarcinoma. | 5 |
| 35152839 | 2022 | Circular RNA CDK6 suppresses cervical cancer proliferation and metastasis by sponging miR-449a. | 2 |
| 35212607 | 2022 | Silencing of long chain noncoding RNA paternally expressed gene (PEG10) inhibits the progression of neuroblastoma by regulating microRNA-449a (miR-449a)/ribosomal protein S2 (RPS2) axis. | 1 |
| 35563522 | 2022 | MicroRNA-449a Inhibits Triple Negative Breast Cancer by Disturbing DNA Repair and Chromatid Separation. | 0 |
| 36206102 | 2022 | Exosome-mediated transfer of circ_0063526 enhances cisplatin resistance in gastric cancer cells via regulating miR-449a/SHMT2 axis. | 7 |
| 34647653 | 2022 | MiRNome analysis identifying miR-205 and miR-449a as biomarkers of disease progression in intestinal-type sinonasal adenocarcinoma. | 5 |
| 35152839 | 2022 | Circular RNA CDK6 suppresses cervical cancer proliferation and metastasis by sponging miR-449a. | 2 |
| 35212607 | 2022 | Silencing of long chain noncoding RNA paternally expressed gene (PEG10) inhibits the progression of neuroblastoma by regulating microRNA-449a (miR-449a)/ribosomal protein S2 (RPS2) axis. | 1 |
| 35563522 | 2022 | MicroRNA-449a Inhibits Triple Negative Breast Cancer by Disturbing DNA Repair and Chromatid Separation. | 0 |
| 36206102 | 2022 | Exosome-mediated transfer of circ_0063526 enhances cisplatin resistance in gastric cancer cells via regulating miR-449a/SHMT2 axis. | 7 |
| 33390186 | 2021 | CDK13 upregulation-induced formation of the positive feedback loop among circCDK13, miR-212-5p/miR-449a and E2F5 contributes to prostate carcinogenesis. | 24 |
Citation
Cristina Gallinas Suazo ; Muriel Lizé
MIR449A (microRNA 449a)
Atlas Genet Cytogenet Oncol Haematol. 2012-10-01
Online version: http://atlasgeneticsoncology.org/gene/50881/mir449a
