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MLL (myeloid/lymphoid or mixed lineage leukemia)

Identity

Other namesALL1, HRX, Htrx (human trithorax), TRX1
HGNC (Hugo) MLL
Location 11q23
Location_base_pair Starts at 117812415 and ends at 117901146 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order telomeric to PLZF, centromeric from RCK
 
  MLL partner genes - Rolf Marschalek Nov 2002.

DNA/RNA

 
  MLL (11q23) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it
Description 37 exons, spanning over 100 kb
Transcription in a centromeric to telomeric direction; 13 and 15 kb; coding sequence: 11.9 kb

Protein

 
Description 3969 amino acids; 431 KDa; contains from N-term to C-term 3 AT hooks homologous to high mobility group proteins HMGA1 and HMGA2, binding to the minor grove of DNA; 2 speckled nuclear localisation signals; 2 repression domains RD1 and RD2: RD1 or CXXC: cystein methyl transferase, binds CpG rich DNA, has a transcriptional repression activity; RD2 recruits histone desacetylases HDAC1 and 2; 3 plant homeodomains (cystein rich zinc finger domains, with homodimerization properties), 1 bromodomain (may bind acetylated histones), and 1 plant homeodomain; these domains may be involved in protein-protein interaction; a FYRN and a FRYC domain; a transactivation domain which binds CBP ; may acetylates H3 and H4 in the HOX area; a SET domain: methyltransferase; methyltates H3, including histones in the HOX area for allowing chromatin to be open to transcription. MLL is cleaved by taspase 1 into 2 proteins before entering the nucleus: a p300/320 N-term protein called MLL-N, and a p180 C-term protein, called MLL-C. The FYRN and a FRYC domains of native MLL associate MLL-N and MLL-C in a stable complex; they form a multiprotein complex with transcription factor TFIID.
Expression wide; especially in: brain, kidney, thyroid; expressed in Taned B lymphocytes and myeloid cells
Localisation nuclear, in punctate spots
Function transcriptional regulatory factor; MLL may have yin-yang functions though actions of MLL-N and MLL-C (e.g. desacetylation/acetylation); MLL-N acts as a transcriptional repressor; MLL can be associated with more than 30 proteins, including the core components of the SWI/SNF chromatin remodeling complex and the transcription complex TFIID. MLL binds promotors of HOX genes through acetylation and methylation of histones. MLL is a major regulator of hematopoesis and embryonic development, through regulation of HOX genes expression regulation ( HOXA9 in particular).
Homology trithorax (Drosophila), ALR (human), MLL2 (human)

Mutations

Note MLL is implicated in at least 10 % of acute leukaemias (AL) of various types: acute lymphoblastic leukemias (ALL), acute non lymphocytic leukemias (ANLL), biphenotypic ALs, treatment related leukemias, infant leukemias; the prognosis is poor

Implicated in

Entity t(4;11)(q21;q23)/acute leukaemias --> MLL-AFF1 (AF4)
Disease typically CD19+ CD10-precursor B-ALL, biphenotypic AL, at times ANLL (M4/M5); common in infants may be congenital; treatment related leukaemia (secondary to epipodophyllotoxins)
Prognosis median survival < 1yr
Cytogenetics additional chromosome anomalies are found in 1/4 of cases, one of which is the i(7q)
Hybrid/Mutated Gene 5' MLL-3' AF4; 12kb
Abnormal Protein 240 kDa protein with about 1400 aminoacids from NH2 MLL and 850 from COOH AF4 (variable breakpoints); the reciprocal may or may not be expressed
  
Entity t(6;11)(q27;q23) /ANLL -->MLL- MLLT4 (AF6)
Disease M5/M4 de novo and therapy related ANLL, T-cell ALL
Prognosis poor
  
Entity t(9;11) (p22;q23)/ANLL -->MLL-MLLT3 (AF9)
Disease M5/M4 de novo and therapy related ANLL
Prognosis the prognosis may not be as poor as in other 11q23 leukaemias in de novo cases; very poor prognosis in secondary ANLL cases
Cytogenetics may be overlooked; often as a sole anomaly
Hybrid/Mutated Gene variable breakpoints on both genes
Abnormal Protein N-term -- AT hook and DNA methyltransferase from MLL fused to the 192 C-term amino acids from AF9 (as breakpoints are variable, this is only an example)
  
Entity t(10;11)(p12;q23) /ANLL --> MLL- MLLT10 (AF10)
Disease M4 or M5 ANLL; ALL at times; therapy related ANLL
Prognosis poor
  
Entity t(11;19)(q23;p13.1) /ANLL --> MLL-ELL
Disease mainly M4/M5; treatment related leukemia; all ages
Prognosis very poor
Cytogenetics detected with R banding
Hybrid/Mutated Gene 5' MLL - 3' ELL
Abnormal Protein AT hook and DNA methyltransferase from MLL fused to most of ELL
Oncogenesis potential transcription factor
  
Entity t(11;19)(q23;p13.3) /acute leukaemias --> MLL-MLLT1 (ENL)
Disease ALL (CD19+), biphenotypic AL, ANLL (M4/M5); mainly congenital; treatment-related leukaemia
Prognosis very poor, except in rare T-cell cases
Cytogenetics detected with G banding
Hybrid/Mutated Gene 5' MLL - 3' ENL
Abnormal Protein AT hook and DNA methyltransferase from MLL fused to, most often, the nearly entire ENL
  
Entity Other entities:
  • t(X;11)(q13;q23)/ANLL, T-ALL --> MLL - AFX1
  • t(X;11)(q22;q23)/ANLL --> MLL- Septin2
  • t(1;11)(p32;q23)/ALL --> MLL- EB15 (AF1p)
  • t(1;11)(q21;q23)/ANLL --> MLL- MLLT11 (AF1q)
  • t(2;11)(q11;q23)/ALL --> MLL- AFF3 (LAF4)
  • t(3;11)(p21;q23)/t-ANLL, ALL--> MLL- NCKIPSD (AF3p21)
  • t(3;11)(q21;q23)/ALL --> MLL- EEFSEC (SELB)
  • t(3;11)(q25;q23)/t-ANLL --> MLL - GMPS
  • t(3;11)(q28;q23)/ANLL --> MLL - LPP
  • t(4;11)(p12;q23) --> MLL - AF4p12
  • t(4;11)(q12;q23) --> MLL - MIFL
  • t(4;11)(q21;q23)/atypical CML --> MLL - SEPT11
  • t(4;11)(q35;q23)--> MLL - ArgBP2
  • t(5;11)(q31;q23)/ANLL, ALL --> MLL - ARHGAP26 (GRAF)
  • ins(5;11)(q31;q13q23)/ALL --> MLL - AFF4 (AF5q31)
  • t(6;11)(q12;q23)/ANLL --> MLL - SMAP1
  • t(6;11)(q21;q23)/ANLL --> MLL - FOXO3A (AF6q21)
  • t(9;11)(q34;q23)/ANLL --> MLL - DAB2IP (AF9q34)
  • t(10;11)(p11;q23)/ANLL --> MLL - ABI1
  • t(10;11)(q21;q23)/ANLL --> MLL - CXXC6 (TET1)
  • t(11;11)(q21;q23)/ANLL --> MLL - PICALM
  • trisomy 11/ANLL --> MLL tandem duplication
  • t(11;11)(q23;q23)/ANLL --> MLL - CBL
  • t(11;11)(q23;q23)/ANLL --> MLL - ARHGEF12 (LARG)
  • t(11;11)(q23;q24)/ANLL --> MLL - TIRAP
  • t(11;12)(q23;q13)/ANLL --> MLL - CIP29
  • t(11;14)(q23;q24)/ANLL, AUL --> MLL - GPHN
  • t(11;15)(q23;q14)/ANLL, ALL --> MLL - CASC5 (AF15q14)
  • t(11;15)(q23;q14) --> MLL - MPFYVE
  • t(11;15)(q23;q15) --> MLL - AF15
  • t(11;16)(q23;p13)/MDS, ANLL, t-ANLL, ALL --> MLL - CREBBP (CBP)
  • t(11;17)(q23;p13)/t-ANLL --> MLL - GAS7
  • t(11;17)(q23;q21)/ANLL --> MLL - ACACA
  • t(11;17)(q23;q21)/ANLL --> MLL - LASP1
  • t(11;17)(q23;q21)/ ANLL --> MLL - MLLT6 (AF17)
  • t(11;17)(q23;q21)/ANLL --> MLL - RARa
  • t(11;17)(q23;q25)/ MDS, ANLL --> MLL - SEPT9 (MSF1, AF17q25)
  • t(11;19)(q23;p13)/ANLL --> MLL - SH3GLI1 (EEN)
  • t(11;19)(q23;p13)/ANLL --> MLL - MYO1F
  • t(11;20)(q23;q11)/ALL --> MLL - MAPRE1 (EB1)
  • t(11;22)(q23;q11.2)/ANLL --> MLL - SEPT5 (hCDCRel)
  • t(11;22)(q23;q13) /ANLL --> MLL - EP300 (P300)
  •   

    Breakpoints

     
    Note spanning a 8 kb genomic region; between exons 5 to 11; highly variable on the partner, ranging from close to the NH2-term in MLLT1 (ENL), to near the COOH-term in MLLT3 (AF9)

    To be noted

    the card on 11q23 rearrangements, gives an overview on diseases implicating MLL, as welle as 11q23 rearrangements in therapy related leukaemias
    See also 11q23 rearrangements in childhood acute lymphoblastic leukemia: Clinical aspects and congenital leukemias

    External links

    Nomenclature
    HGNC (Hugo)MLL   7132
    Entrez_Gene (NCBI)MLL  4297  myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)
    Cards
    AtlasMLL
    GeneCards (Weizmann)MLL
    Ensembl (Hinxton)ENSG00000118058 [Gene_View]  MLL [Vega]
    AceView (NCBI)MLL
    Genatlas (Paris)MLL
    euGene (Indiana)4297
    SOURCE (Stanford)NM_005933
    Genomic and cartography
    GoldenPath (UCSC)MLL  -  11q23   chr11:117812415-117901146 +  11q23   [Description]    (hg18-Mar_2006)
    EnsemblMLL - 11q23 [CytoView]
    Mapping of homologs : NCBIMLL [Mapview]
    OMIM159555   
    Gene and transcription
    Gene : Genbank (Entrez)AB209508 AF231995 AF231998 AF231999 AF232000
    Reference sequence (RefSeq transcript) :SRSNM_005933
    Reference transcript : EntrezNM_005933
    RefSeq genomic : SRSAC_000054 AC_000143 NC_000011 NT_033899 NW_001838042 NW_925173
    RefSeq genomic : EntrezAC_000054 AC_000143 NC_000011 NT_033899 NW_001838042 NW_925173
    Consensus coding sequences : CCDS NCBIMLL
    Cluster EST : UnigeneHs.258855 [ SRS ] Hs.258855 [ NCBI ]
    Alternative Splicing : Fast-db (Paris)14280
    Protein : pattern, domain, 3D structure
    Protein : UniProt/SwissProtQ03164 (SRS) Q03164 (Expasy) Q03164 (Uniprot)
    With graphics : InterProQ03164
    Splice isoforms : VarSplice FASTAQ03164(VarSplice FASTA)
    Domaine pattern : Prosite (SRS)BROMODOMAIN_2 (PS50014)    POST_SET (PS50868)    SET (PS50280)    ZF_CXXC (PS51058)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
    Domain pattern : Prosite (Expaxy)BROMODOMAIN_2 (PS50014)    POST_SET (PS50868)    SET (PS50280)    ZF_CXXC (PS51058)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
    Domains : Interpro (SRS)AT_hook_DNA_bd    Bromodomain    FYrich_C    FYrich_N    MeTrfase_trithorax    Post-SET_Zn_bd    SET    Znf_CXXC    Znf_PHD    Znf_RING/FYVE/PHD   
    Domains : Interpro (EBI)AT_hook_DNA_bd    Bromodomain    FYrich_C    FYrich_N    MeTrfase_trithorax    Post-SET_Zn_bd    SET    Znf_CXXC    Znf_PHD    Znf_RING/FYVE/PHD   
    Related proteins : CluSTrQ03164
    Domain families : Pfam SRSAT_hook (PF02178)    FYRC (PF05965)    FYRN (PF05964)    PHD (PF00628)    SET (PF00856)    zf-CXXC (PF02008)   
    Domain families : Pfam SangerAT_hook (PF02178)    FYRC (PF05965)    FYRN (PF05964)    PHD (PF00628)    SET (PF00856)    zf-CXXC (PF02008)   
    Domain families : Pfam NCBIpfam02178    pfam05965    pfam05964    pfam00628    pfam00856    pfam02008   
    Domain families : Smart EMBLAT_hook (SM00384)BROMO (SM00297)FYRC (SM00542)FYRN (SM00541)PHD (SM00249)PostSET (SM00508)SET (SM00317)
    Blocks (Seattle)Q03164
    Crystal structure of protein : PDB SRS2AGH    2J2S    3EG6   
    Crystal structure of protein : PDBSum2AGH    2J2S    3EG6   
    Crystal structure of protein : IMB2AGH    2J2S    3EG6   
    Crystal structure of protein : PDB RSDB2AGH    2J2S    3EG6   
    HPRD01162
    Protein Interaction databases
    DIP (DOE-UCLA)Q03164
    IntAct (EBI)Q03164
    Polymorphism : SNP, mutations, diseases
    Single Nucleotide Polymorphism (SNP) : dbSNP NCBIMLL
    SNP : GeneSNP UtahMLL
    SNP : HGBaseMLL
    Genetic variants : HAPMAPMLL
    Somatic Mutations in Cancer : COSMICMLL 
    Translocation Breakpoints in Cancer : TICdbMLL 
    Mutations and Diseases : HGMDMLL
    Hereditary diseases : OMIM159555   
    Hereditary diseases : GENETests159555   
    Diseases : Genetic AssociationMLL
    General knowledge
    Homologs : HomoloGeneMLL
    Homology/Alignments : Family Browser UCSCMLL
    Phylogenetic Trees/Animal Genes : TreeFamMLL
    Catalytic activity : Enzyme2.1.1.43 [ Enzyme-Expasy ]   2.1.1.43 [ Enzyme-SRS ]   2.1.1.43 [ IntEnz-EBI ]   2.1.1.43 [ BRENDA ]   2.1.1.43 [ KEGG ]   
    Chemical/Protein Interactions : CTD4297
    Keywords Ontology : AmiGOtranscription factor activity  RNA polymerase II transcription factor activity  nucleus  transcription  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  protein complex assembly  apoptosis  methyltransferase activity  zinc ion binding  chromatin modification  transferase activity  histone methyltransferase complex  embryonic hemopoiesis  histone methyltransferase activity (H3-K4 specific)  protein homodimerization activity  metal ion binding  
    Keywords Ontology : EGO-EBItranscription factor activity  RNA polymerase II transcription factor activity  nucleus  transcription  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  protein complex assembly  apoptosis  methyltransferase activity  zinc ion binding  chromatin modification  transferase activity  histone methyltransferase complex  embryonic hemopoiesis  histone methyltransferase activity (H3-K4 specific)  protein homodimerization activity  metal ion binding  
    Pathways : BIOCARTA
    Pathways : KEGG
    Other databases
    Probes
    ProbeMLL1 (11q23) in normal cells (Bari)
    Probes : ImagenesMLL Related clones (RZPD - Berlin)
    Literature
    PubMed157 Pubmed reference(s) in Entrez
    PubGeneMLL

    Bibliography

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    Schichman SA, Canaani E, Croce CM
    JAMA : the journal of the American Medical Association. 1995 ; 273 (7) : 571-576.
    PMID 7837391
     
    Molecular basis of 11q23 rearrangements in hematopoietic malignant proliferations.
    Bernard OA, Berger R
    Genes, chromosomes & cancer. 1995 ; 13 (2) : 75-85.
    PMID 7542910
     
    Complete exon structure of the ALL1 gene.
    Rasio D, Schichman SA, Negrini M, Canaani E, Croce CM
    Cancer research. 1996 ; 56 (8) : 1766-1769.
    PMID 8620491
     
    Exon/intron structure of the human ALL-1 (MLL) gene involved in translocations to chromosomal region 11q23 and acute leukaemias.
    Nilson I, Lˆchner K, Siegler G, Greil J, Beck JD, Fey GH, Marschalek R
    British journal of haematology. 1996 ; 93 (4) : 966-972.
    PMID 8703835
     
    Chromosome abnormalities in leukaemia: the 11q23 paradigm.
    Young BD, Saha V
    Cancer surveys. 1996 ; 28 : 225-245.
    PMID 8977038
     
    11q23 rearrangements in acute leukemia.
    Rubnitz JE, Behm FG, Downing JR
    Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K. 1996 ; 10 (1) : 74-82.
    PMID 8558942
     
    Structure and expression pattern of human ALR, a novel gene with strong homology to ALL-1 involved in acute leukemia and to Drosophila trithorax.
    Prasad R, Zhadanov AB, Sedkov Y, Bullrich F, Druck T, Rallapalli R, Yano T, Alder H, Croce CM, Huebner K, Mazo A, Canaani E
    Oncogene. 1997 ; 15 (5) : 549-560.
    PMID 9247308
     
    Disruption of a homolog of trithorax by 11q23 translocations: leukemogenic and transcriptional implications.
    Waring PM, Cleary ML
    Current topics in microbiology and immunology. 1997 ; 220 : 1-23.
    PMID 9103672
     
    Mll rearrangements in haematological malignancies: lessons from clinical and biological studies.
    Dimartino JF, Cleary ML
    British journal of haematology. 1999 ; 106 (3) : 614-626.
    PMID 10468849
     
    MLL2, the second human homolog of the Drosophila trithorax gene, maps to 19q13.1 and is amplified in solid tumor cell lines.
    Huntsman DG, Chin SF, Muleris M, Batley SJ, Collins VP, Wiedemann LM, Aparicio S, Caldas C
    Oncogene. 1999 ; 18 (56) : 7975-7984.
    PMID 10637508
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written12-1997Jean-Loup Huret
    Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France
    Updated12-2000Jay L Hess, Jean-Loup Huret
    Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France
    Updated11-2002Rolf Marschalek
    Instituts fĂźr Pharmazeutische Biologie, JWG Universitaet Frankfurt/Main, Biozentrum, N230, 303, Marie Curie Str. 9, D-60439 Frankfurt/Main, Germany
    Updated10-2005Jean-Loup Huret
    Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France

    Citation

    This paper should be referenced as such :
    Huret JL . MLL (myeloid/lymphoid or mixed lineage leukemia). Atlas Genet Cytogenet Oncol Haematol. December 1997 .
    URL : http://AtlasGeneticsOncology.org/Genes/MLL.html
    Hess JL and Huret JL . MLL (myeloid/lymphoid or mixed lineage leukemia). Atlas Genet Cytogenet Oncol Haematol. December 2000 .
    URL : http://AtlasGeneticsOncology.org/Genes/MLL.html
    Marschalek R . MLL (myeloid/lymphoid or mixed lineage leukemia). Atlas Genet Cytogenet Oncol Haematol. November 2002 .
    URL : http://AtlasGeneticsOncology.org/Genes/MLL.html
    Huret JL . MLL (myeloid/lymphoid or mixed lineage leukemia). Atlas Genet Cytogenet Oncol Haematol. October 2005 .
    URL : http://AtlasGeneticsOncology.org/Genes/MLL.html

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    indexed on : Sat Jun 27 16:38:28 CEST 2009

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