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MSI2 (musashi homolog 2 (drosophila))

Identity

Other namesMSI2H
FLJ36569
MGC3245
HGNC (Hugo) MSI2
LocusID (NCBI) 124540
Location 17q23.2
Location_base_pair Starts at 55333931 and ends at 55757299 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description The gene spans 424 kb.on plus strand; at least 15 exons.
Transcription alternate splicing; at least 3 transcripts, of which are transcripts of 1,6 and 2,1 kb.

Protein

 
Description 328 amino acids, 35 kDa, and 251 amino acidsThe Musashi (Msi) family genes possess 2 ribonucleoprotein (RNP or ribonucleo particle)-type RNA recognition motifs (RRMs) in the N-term; each RRM comprises 2 highly conserved sequences called RNP1 and RNP2. Heterogeneous nuclear ribonucleoparticle (hnRNP) proteins are nuclear proteins implicated in hnRNA (pre-mRNA transcript) processing; Msi2 and Msi1 have similar RNA-binding specificity.
Expression Ubiquitously expressed in various tissues; expressed predominently in precursor cells in the ventricular zone and subventricular zone of the central nervous system (CNS); in CNS stem cells during embryogenesis; in the postnatal and adult CNS, the expression of Msi2 and Msi1 disappear in most post mitotic or migrating cells, but is found in cells of the astrocyte lineage; coexpressed with Msi1.
Function RNA-binding protein. Some RNA-binding proteins are neural-specific. The development of neural cells from precursors may be partly regulated at the post-transcriptional level by mRNA stabilization or translational control in the cytoplasm. Msi2 may have a unique role in CNS stem cells through life.
Homology MSI1

Mutations

Germinal Defective MSI2 might play a role in certain dementia (although this chromosomal region also contain several loci known to be involved in neurological disorders ( NF1 and others).
Somatic see below.

Implicated in

Entity Chronic myelogenous leukemia (CML) in accelerated phase (AP-CML) with either a t(7;17)(p15;q23) and a HOXA9 / MSI2 hybrid gene, or a t(7;17)(q32-34;q23) and a ? possible gene of the plexin family/MSI2 hybrid gene.
Hybrid/Mutated Gene 5' MSI2 - 3' HOXA9 in the t(7;17)(p15;q23)
Oncogenesis In the t(7;17)(p15;q23) the fusion protein contains, from N-term to C-term, the 2 RNA recognition motifs of MSI2 and the the IME and the homeobox domain of HOXA9
  

External links

Nomenclature
HGNC (Hugo)MSI2   18585
Entrez_Gene (NCBI)MSI2  124540  musashi homolog 2 (Drosophila)
Cards
AtlasMSI2ID42893ch17q23
GeneCards (Weizmann)MSI2
Ensembl (Hinxton)ENSG00000153944 [Gene_View]  chr17:55333931-55757299 [Contig_View]  MSI2 [Vega]
AceView (NCBI)MSI2
Genatlas (Paris)MSI2
euGene (Indiana)124540
SOURCE (Stanford)NM_138962 NM_170721
Genomic and cartography
GoldenPath (UCSC)MSI2  -  17q23.2   chr17:55333931-55757299 +  17q22   [Description]    (hg19-Feb_2009)
EnsemblMSI2 - 17q22 [CytoView]
Mapping of homologs : NCBIMSI2 [Mapview]
OMIM607897   
Gene and transcription
Genbank (Entrez)AI798817 AK093888 AK295060 AK297295 BC001526
RefSeq transcript (SRS)NM_138962 NM_170721
RefSeq transcript (Entrez)NM_138962 NM_170721
RefSeq genomic (SRS)AC_000149 NC_000017 NT_010783 NW_001838448
RefSeq genomic (Entrez)AC_000149 NC_000017 NT_010783 NW_001838448
Consensus coding sequences : CCDS (NCBI)MSI2
Cluster EST : UnigeneHs.658922 [ SRS ] Hs.658922 [ NCBI ]
Alternative Splicing : Fast-db (Paris)13196
Alternative Splicing GalleryENSG00000153944
Gene ExpressionMSI2 [ NCBI-GEO ]   MSI2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DH6 (SRS) Q96DH6 (Uniprot)
With graphics : InterProQ96DH6
Splice isoforms : SwissVarQ96DH6(Swissvar)
Domaine pattern : Prosite (SRS)RRM (PS50102)   
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (SRS)Nucleotide-bd_a/b_plait    RRM_dom   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Related proteins : CluSTrQ96DH6
Domain families : Pfam (SRS)RRM_1 (PF00076)   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Blocks (Seattle)Q96DH6
Human Protein AtlasENSG00000153944
HPRD07438
IPIIPI00073713   IPI00167806   IPI00455161   IPI00910884   IPI00908857   
Protein Interaction databases
DIP (DOE-UCLA)Q96DH6
IntAct (EBI)Q96DH6
FunCoupENSG00000153944
REACTOMEMSI2
BioGRIDMSI2
InParanoidQ96DH6
Interologous Interaction database Q96DH6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MSI2
SNP (GeneSNP Utah)MSI2
SNP : HGBaseMSI2
Genetic variants : HAPMAPMSI2
Cancer Gene: CensusMSI2 
Somatic Mutations in Cancer : COSMICMSI2 
CONAN: Copy Number AnalysisMSI2 
Translocation Breakpoints in Cancer : TICdbMSI2 
Mutations and Diseases : HGMDMSI2
OMIM607897   
GENETests607897   
Disease Genetic AssociationMSI2
Huge Navigator MSI2 [HugePedia]  MSI2 [HugeCancerGEM]
Genomic VariantsMSI2
snp3D : Map Gene to Disease124540
General knowledge
Homologs : HomoloGeneMSI2
Homology/Alignments : Family Browser (UCSC)MSI2
Phylogenetic Trees/Animal Genes : TreeFamMSI2
Chemical/Protein Interactions : CTD124540
Chemical/Pharm GKB GenePA38590
Clinical trialMSI2
Cancer Resource (Charite)ENSG00000153944
Ontology : AmiGOnucleotide binding  single-stranded RNA binding  cytoplasm  polysome  poly(U) RNA binding  stem cell development  
Ontology : EGO-EBInucleotide binding  single-stranded RNA binding  cytoplasm  polysome  poly(U) RNA binding  stem cell development  
Other databases
Probes
Probes : ImagenesMSI2 Related clones (RZPD - Berlin)
Litterature
PubMed20 Pubmed reference(s) in Entrez
PubGeneMSI2
iHOPMSI2

Bibliography

Rna-binding protein Musashi2: developmentally regulated expression in neural precursor cells and subpopulations of neurons in mammalian CNS.
Sakakibara S, Nakamura Y, Satoh H, Okano H
The Journal of neuroscience : the official journal of the Society for Neuroscience. 2001 ; 21 (20) : 8091-8107.
PMID 11588182
 
RNA-binding protein Musashi family: roles for CNS stem cells and a subpopulation of ependymal cells revealed by targeted disruption and antisense ablation.
Sakakibara S, Nakamura Y, Yoshida T, Shibata S, Koike M, Takano H, Ueda S, Uchiyama Y, Noda T, Okano H
Proceedings of the National Academy of Sciences of the United States of America. 2002 ; 99 (23) : 15194-15199.
PMID 12407178
 
Multicolor COBRA-FISH analysis of chronic myeloid leukemia reveals novel cryptic balanced translocations during disease progression.
Barbouti A, Johansson B, Hˆglund M, Mauritzson N, Strˆmbeck B, Nilsson PG, Tanke HJ, Hagemeijer A, Mitelman F, Fioretos T
Genes, chromosomes & cancer. 2002 ; 35 (2) : 127-137.
PMID 12203776
 
A novel gene, MSI2, encoding a putative RNA-binding protein is recurrently rearranged at disease progression of chronic myeloid leukemia and forms a fusion gene with HOXA9 as a result of the cryptic t(7;17)(p15;q23).
Barbouti A, Hˆglund M, Johansson B, Lassen C, Nilsson PG, Hagemeijer A, Mitelman F, Fioretos T
Cancer research. 2003 ; 63 (6) : 1202-1206.
PMID 12649177
 
Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences.
Akindahunsi AA, Bandiera A, Manzini G
Computational biology and chemistry. 2005 ; 29 (1) : 13-23.
PMID 15680582
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2005Jean Loup Huret

Citation

This paper should be referenced as such :
Huret JL . MSI2 (musashi homolog 2 (drosophila)). Atlas Genet Cytogenet Oncol Haematol. August 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/MSI2ID42893ch17q23.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/38247/1/08-2005-MSI2ID42893ch17q23.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:10:01 CEST 2012

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