Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MSI2 (musashi homolog 2 (drosophila))

Identity

Other namesMSI2H
FLJ36569
MGC3245
HGNC MSI2
Location 17q23.2

DNA/RNA

Description The gene spans 424 kb.on plus strand; at least 15 exons.
Transcription alternate splicing; at least 3 transcripts, of which are transcripts of 1,6 and 2,1 kb.

Protein

 
Description 328 amino acids, 35 kDa, and 251 amino acidsThe Musashi (Msi) family genes possess 2 ribonucleoprotein (RNP or ribonucleo particle)-type RNA recognition motifs (RRMs) in the N-term; each RRM comprises 2 highly conserved sequences called RNP1 and RNP2. Heterogeneous nuclear ribonucleoparticle (hnRNP) proteins are nuclear proteins implicated in hnRNA (pre-mRNA transcript) processing; Msi2 and Msi1 have similar RNA-binding specificity.
Expression Ubiquitously expressed in various tissues; expressed predominently in precursor cells in the ventricular zone and subventricular zone of the central nervous system (CNS); in CNS stem cells during embryogenesis; in the postnatal and adult CNS, the expression of Msi2 and Msi1 disappear in most post mitotic or migrating cells, but is found in cells of the astrocyte lineage; coexpressed with Msi1.
Function RNA-binding protein. Some RNA-binding proteins are neural-specific. The development of neural cells from precursors may be partly regulated at the post-transcriptional level by mRNA stabilization or translational control in the cytoplasm. Msi2 may have a unique role in CNS stem cells through life.
Homology MSI1

Mutations

Germinal Defective MSI2 might play a role in certain dementia (although this chromosomal region also contain several loci known to be involved in neurological disorders ( NF1 and others).
Somatic see below.

Implicated in

Entity Chronic myelogenous leukemia (CML) in accelerated phase (AP-CML) with either a t(7;17)(p15;q23) and a HOXA9 / MSI2 hybrid gene, or a t(7;17)(q32-34;q23) and a ? possible gene of the plexin family/MSI2 hybrid gene.
Hybrid/Mutated Gene 5' MSI2 - 3' HOXA9 in the t(7;17)(p15;q23)
Oncogenesis In the t(7;17)(p15;q23) the fusion protein contains, from N-term to C-term, the 2 RNA recognition motifs of MSI2 and the the IME and the homeobox domain of HOXA9
  

External links

Nomenclature
HGNCMSI2   18585
Entrez_GeneMSI2  124540  musashi homolog 2 (Drosophila)
Cards
AtlasMSI2ID42893ch17q23
GeneCardsMSI2
EnsemblMSI2 [Search_View]   ENSG00000153944 [Gene_View]
GenatlasMSI2
GeneLynxMSI2
eGenomeMSI2
euGene124540
Genomic and cartography
GoldenPathMSI2  -  17q23.2   chr17:52688930-53112298 +  17q22   [Description]    (hg18-Mar_2006)
EnsemblMSI2 - 17q22 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneMSI2
Gene and transcription
GenbankAI798817 [ ENTREZ ]
GenbankAK093888 [ ENTREZ ]
GenbankBC001526 [ ENTREZ ]
GenbankBC017560 [ ENTREZ ]
GenbankBE836557 [ ENTREZ ]
RefSeqNM_138962 [ SRS ]    NM_138962 [ ENTREZ ]
RefSeqNM_170721 [ SRS ]    NM_170721 [ ENTREZ ]
RefSeqAC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeqAC_000149 [ SRS ]    AC_000149 [ ENTREZ ]
RefSeqNC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeqNT_010783 [ SRS ]    NT_010783 [ ENTREZ ]
RefSeqNW_001838448 [ SRS ]    NW_001838448 [ ENTREZ ]
RefSeqNW_926894 [ SRS ]    NW_926894 [ ENTREZ ]
AceViewMSI2 AceView - NCBI
UnigeneHs.658922 [ SRS ]    Hs.658922 [ NCBI ]     HS658922 [ spliceNest ]
Fast-db13196 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ96DH6 [ SRS]    Q96DH6 [ EXPASY ]     Q96DH6 [ INTERPRO ]     Q96DH6 [ UNIPROT ]
PrositePS50102 RRM [ SRS ]    PS50102 RRM [ Expasy ]
InterproIPR012677 a_b_plait_nuc_bd [ SRS ]    IPR012677 a_b_plait_nuc_bd [ EBI ]
InterproIPR000504 RRM_RNP1 [ SRS ]    IPR000504 RRM_RNP1 [ EBI ]
CluSTrQ96DH6
PfamPF00076 RRM_1 [ SRS ]    PF00076 RRM_1 [ Sanger ]    pfam00076 [ NCBI-CDD ]
SmartSM00360 RRM [EMBL]
BlocksQ96DH6
HPRD07438
Protein Interaction databases
DIPQ96DH6
IntActQ96DH6
Polymorphism : SNP, mutations, diseases
OMIM607897    [ map ]   
GENECLINICS607897
SNPMSI2 [dbSNP-NCBI]  
SNPNM_138962 [SNP-NCI]  
SNPNM_170721 [SNP-NCI]  
SNPMSI2 [GeneSNPs - Utah]  MSI2] [HGBASE - SRS]
HAPMAPMSI2 [HAPMAP]  
COSMICMSI2 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbMSI2 [Translocation breakpoints In Cancer]  
HGMDMSI2
General knowledge
Family BrowserMSI2 [UCSC Family Browser]
SOURCENM_138962
SOURCENM_170721
SMDHs.658922
SAGEHs.658922
GOnucleotide binding [Amigo]  nucleotide binding
GORNA binding [Amigo]  RNA binding
GOcytoplasm [Amigo]  cytoplasm
PubGeneMSI2
TreeFamMSI2
CTD124540 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeMSI2 Related clones (RZPD - Berlin)
PubMed
PubMed6 Pubmed reference(s) in Entrez

Bibliography

Rna-binding protein Musashi2: developmentally regulated expression in neural precursor cells and subpopulations of neurons in mammalian CNS.
Sakakibara S, Nakamura Y, Satoh H, Okano H
The Journal of neuroscience : the official journal of the Society for Neuroscience. 2001 ; 21 (20) : 8091-8107.
PMID 11588182
 
RNA-binding protein Musashi family: roles for CNS stem cells and a subpopulation of ependymal cells revealed by targeted disruption and antisense ablation.
Sakakibara S, Nakamura Y, Yoshida T, Shibata S, Koike M, Takano H, Ueda S, Uchiyama Y, Noda T, Okano H
Proceedings of the National Academy of Sciences of the United States of America. 2002 ; 99 (23) : 15194-15199.
PMID 12407178
 
Multicolor COBRA-FISH analysis of chronic myeloid leukemia reveals novel cryptic balanced translocations during disease progression.
Barbouti A, Johansson B, Hˆglund M, Mauritzson N, Strˆmbeck B, Nilsson PG, Tanke HJ, Hagemeijer A, Mitelman F, Fioretos T
Genes, chromosomes & cancer. 2002 ; 35 (2) : 127-137.
PMID 12203776
 
A novel gene, MSI2, encoding a putative RNA-binding protein is recurrently rearranged at disease progression of chronic myeloid leukemia and forms a fusion gene with HOXA9 as a result of the cryptic t(7;17)(p15;q23).
Barbouti A, Hˆglund M, Johansson B, Lassen C, Nilsson PG, Hagemeijer A, Mitelman F, Fioretos T
Cancer research. 2003 ; 63 (6) : 1202-1206.
PMID 12649177
 
Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences.
Akindahunsi AA, Bandiera A, Manzini G
Computational biology and chemistry. 2005 ; 29 (1) : 13-23.
PMID 15680582
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written08-2005Jean Loup Huret

Citation

This paper should be referenced as such :
Huret JL . MSI2 (musashi homolog 2 (drosophila)). Atlas Genet Cytogenet Oncol Haematol. August 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/MSI2ID42893ch17q23.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 29 18:42:35 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.