Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NKX2-2 (NK2 homeobox 2)

Identity

Other namesNKX2.2
NKX2B
HGNC (Hugo) NKX2-2
Location 20p11.22
Location_base_pair Starts at 21491664 and ends at 21494664 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description Start- 21,439,648 base pairs from p arm terminus; End- 21,442,699 base pairs from p arm terminus; Size- 3,051 bases; Orientation- minus strand

Protein

 
  Schematic of NKX2-2 functional domains. The positions of the transcriptional repressor domain (TN), the homeodomain (HD), the NK2-specific domain (SD), and the transcriptional activation domain (TAD) are shown.
Description 273 amino acids; 30133 Da. NKX2-2 is a member of the NK2 family of homeobox transcription factors. It has known roles in the development of the CNS as well as pancreatic beta cell differentiation. In the CNS NKX2-2 is known to be activated by SHH signaling which is important for its initial role in ventral patterning. NKX2-2 expression has additionally been shown to be critical for the differentiation of oligodendrocytes, and in fact necessary for this process to occur. In both instances, NKX2-2 mediated transcripitional repression is both necessary and sufficient for these processes to occur. Regulation of NKX2-2 expression in the pancreas is less well understood. NKX2-2 knock-out mice die soon after birth from diabetic complications as a result of a lack of fully differentiated pancreatic beta cells. While NKX2-2 mediated transcriptional repression has been demonstrated to be necessary and sufficient for its role in ß-cell differentiation, it remains unclear whether NKX2-2 mediated transcriptional activation is important for NKX2-2 function in adult ß-cells.
Expression V3 neural progenitors; oligodendrocyte precursor cells; precursor and adult pancreatic beta cells.
Localisation Nuclear
Function NKX2-2 is a transcription factor
Homology NKX2-2 shares homology with other members of the NK2 family of transcription factors most notably in the TN transcriptional repression, DNA binding homeodomain, and specific domain regions.

Implicated in

Entity Ewing's sarcoma
Prognosis Roughly 50% survival at 5 years for Ewing's sarcoma.
Cytogenetics Ewing's sarcoma cells harbor the characteristic translocation t(11;22)(q24;q12) in roughly 90% of cases.
Hybrid/Mutated Gene t(11;22)(q24;q12) fuses the 5' region of the EWSR1 gene on chromosome 22 with the 3' portion of the FLI-1 gene on chromosome 11.
Abnormal Protein The translocation fusion product is termed EWS/FLI.
 
Schematic diagram of wild-type EWS, wild-type FLI, and the EWS/FLI fusion transcripts.
Oncogenesis NKX2-2 is up-regulated in Ewing's sarcoma by the EWS/FLI translocation protein product. NKX2.2 expression is necessary for the oncogenic phenotype of Ewing's sarcoma cells.
  

External links

Nomenclature
HGNC (Hugo)NKX2-2   7835
Entrez_Gene (NCBI)NKX2-2  4821  NK2 homeobox 2
Cards
AtlasNKX22ID44177ch20p11
GeneCards (Weizmann)NKX2-2
Ensembl (Hinxton)ENSG00000125820 [Gene_View]  NKX2-2 [Vega]
AceView (NCBI)NKX2-2
Genatlas (Paris)NKX2-2
euGene (Indiana)4821
SOURCE (Stanford)NM_002509
Gene Expression (Array Express) ENSG00000125820
Genomic and cartography
GoldenPath (UCSC)NKX2-2  -  20p11.22   chr20:21491664-21494664 -  20pter-q11.23   [Description]    (hg19-Feb_2009)
EnsemblNKX2-2 - 20pter-q11.23 [CytoView]
Mapping of homologs : NCBINKX2-2 [Mapview]
OMIM604612   
Gene and transcription
Gene : Genbank (Entrez)BC075092 BC075093 BM314196 BQ632044 CA772329
Reference sequence (RefSeq transcript) :SRSNM_002509
Reference transcript : EntrezNM_002509
RefSeq genomic : SRSAC_000063 AC_000152 NC_000020 NT_011387 NW_001838652 NW_927317
RefSeq genomic : EntrezAC_000063 AC_000152 NC_000020 NT_011387 NW_001838652 NW_927317
Consensus coding sequences : CCDS NCBINKX2-2
Cluster EST : UnigeneHs.721413 [ SRS ] Hs.721413 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6733
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO95096 (SRS) O95096 (Expasy) O95096 (Uniprot)
With graphics : InterProO95096
Splice isoforms : VarSplice FASTAO95096(VarSplice FASTA)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domain pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Homeobox    Homeobox_CS    Homeobox_region    Homeodomain-like    Homeodomain-rel   
Domains : Interpro (EBI)Homeobox    Homeobox_CS    Homeobox_region    Homeodomain-like    Homeodomain-rel   
Related proteins : CluSTrO95096
Domain families : Pfam SRSHomeobox (PF00046)   
Domain families : Pfam SangerHomeobox (PF00046)   
Domain families : Pfam NCBIpfam00046   
Domain families : Smart EMBLHOX (SM00389)  
Blocks (Seattle)O95096
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
Human Protein AtlasENSG00000125820
HPRD05213
Protein Interaction databases
DIP (DOE-UCLA)O95096
IntAct (EBI)O95096
FunCoupENSG00000125820
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBINKX2-2
SNP : GeneSNP UtahNKX2-2
SNP : HGBaseNKX2-2
Genetic variants : HAPMAPNKX2-2
Somatic Mutations in Cancer : COSMICNKX2-2 
Mutations and Diseases : HGMDNKX2-2
Hereditary diseases : OMIM604612   
Hereditary diseases : GENETests604612   
Diseases : Genetic AssociationNKX2-2
General knowledge
Homologs : HomoloGeneNKX2-2
Homology/Alignments : Family Browser UCSCNKX2-2
Phylogenetic Trees/Animal Genes : TreeFamNKX2-2
Chemical/Protein Interactions : CTD4821
Keywords Ontology : AmiGOtranscription factor activity  protein binding  nucleus  nucleolus  cytoplasm  regulation of transcription, DNA-dependent  smoothened signaling pathway  multicellular organismal development  nervous system development  brain development  oligodendrocyte development  spinal cord oligodendrocyte cell fate specification  endocrine pancreas development  sequence-specific DNA binding  negative regulation of neuron differentiation  positive regulation of neuron differentiation  positive regulation of transcription from RNA polymerase II promoter  cell development  neuron fate specification  
Keywords Ontology : EGO-EBItranscription factor activity  protein binding  nucleus  nucleolus  cytoplasm  regulation of transcription, DNA-dependent  smoothened signaling pathway  multicellular organismal development  nervous system development  brain development  oligodendrocyte development  spinal cord oligodendrocyte cell fate specification  endocrine pancreas development  sequence-specific DNA binding  negative regulation of neuron differentiation  positive regulation of neuron differentiation  positive regulation of transcription from RNA polymerase II promoter  cell development  neuron fate specification  
Pathways : BIOCARTA
Pathways : KEGGMaturity onset diabetes of the young
Other databases
Probes
Probes : ImagenesNKX2-2 Related clones (RZPD - Berlin)
Literature
PubMed15 Pubmed reference(s) in Entrez
PubGeneNKX2-2

Bibliography

Gene fusion with an ETS DNA-binding domain caused by chromosome translocation in human tumours.
Delattre O, Zucman J, Plougastel B, Desmaze C, Melot T, Peter M, Kovar H, Joubert I, de Jong P, Rouleau G
Nature. 1992 ; 359 (6391) : 162-165.
PMID 1522903
 
Ewing sarcoma 11;22 translocation produces a chimeric transcription factor that requires the DNA-binding domain encoded by FLI1 for transformation.
May WA, Gishizky ML, Lessnick SL, Lunsford LB, Lewis BC, Delattre O, Zucman J, Thomas G, Denny CT
Proceedings of the National Academy of Sciences of the United States of America. 1993 ; 90 (12) : 5752-5756.
PMID 8516324
 
Mice lacking the homeodomain transcription factor Nkx2.2 have diabetes due to arrested differentiation of pancreatic beta cells.
Sussel L, Kalamaras J, Hartigan-O'Connor DJ, Meneses JJ, Pedersen RA, Rubenstein JL, German MS
Development (Cambridge, England). 1998 ; 125 (12) : 2213-2221.
PMID 9584121
 
Homeobox gene Nkx2.2 and specification of neuronal identity by graded Sonic hedgehog signalling.
Briscoe J, Sussel L, Serup P, Hartigan-O'Connor D, Jessell TM, Rubenstein JL, Ericson J
Nature. 1999 ; 398 (6728) : 622-627.
PMID 10217145
 
Intramolecular control of transcriptional activity by the NK2-specific domain in NK-2 homeodomain proteins.
Watada H, Mirmira RG, Kalamaras J, German MS
Proceedings of the National Academy of Sciences of the United States of America. 2000 ; 97 (17) : 9443-9448.
PMID 10944215
 
Groucho-mediated transcriptional repression establishes progenitor cell pattern and neuronal fate in the ventral neural tube.
Muhr J, Andersson E, Persson M, Jessell TM, Ericson J
Cell. 2001 ; 104 (6) : 861-873.
PMID 11290324
 
Stage-specific expression of myelin basic protein in oligodendrocytes involves Nkx2.2-mediated repression that is relieved by the Sp1 transcription factor.
Wei Q, Miskimins WK, Miskimins R
The Journal of biological chemistry. 2005 ; 280 (16) : 16284-16294.
PMID 15695521
 
Identification of target genes in their native cellular context: an analysis of EWS/FLI in Ewing's sarcoma.
Owen LA, Lessnick SL
Cell cycle (Georgetown, Tex.). 2006 ; 5 (18) : 2049-2053.
PMID 16969112
 
Expression profiling of EWS/FLI identifies NKX2.2 as a critical target gene in Ewing's sarcoma.
Smith R, Owen LA, Trem DJ, Wong JS, Whangbo JS, Golub TR, Lessnick SL
Cancer cell. 2006 ; 9 (5) : 405-416.
PMID 16697960
 
Nkx2.2-repressor activity is sufficient to specify alpha-cells and a small number of beta-cells in the pancreatic islet.
Doyle MJ, Loomis ZL, Sussel L
Development (Cambridge, England). 2007 ; 134 (3) : 515-523.
PMID 17202186
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written01-2008Stephen L Lessnick, Leah A Owen
Department of Oncological Sciences, University of Utah School of Medicine, Center for Children, Huntsman Cancer Institute, and Division of Pediatric Hematology/Oncology, University of Utah School of Medicine, Salt Lake City, Utah, USA

Citation

This paper should be referenced as such :
Lessnick SL, Owen LA . NKX2-2 (NK2 homeobox 2). Atlas Genet Cytogenet Oncol Haematol. January 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/NKX22ID44177ch20p11.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 15 14:46:41 CEST 2010

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