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NOTCH2 (Notch homolog 2 (Drosophila))

Identity

Other namesAGS2
hN2
HGNC NOTCH2
Location 1p12

DNA/RNA

 
Description 34 exons
Transcription 7860 bp

Protein

 
  A. : 2472 AA, 265.4 KD.
LNR: Lin/Notch repeats (light blue); TM: transmembrane; OPA: glutamine-rich region; PEST sequence
Dark blue: Epidermal Growth Factor repeats
Light red: ankyrin repeats
Dark red: Nuclear localization signal
B. : Notch activation diagram
Description This gene encodes a member of the Notch family. Members of this family are Type1 transmembrane receptors and share structural characteristics represented in the diagram. The conserved domains include 36 EGF repeats and 3 lin/Notch Repeats (LNR) in the extracellular domain, 7 Ankyrin repeats, 2 different nuclear localization domains and 1 OPA/PEST region conform the intracellular domain.
The Notch2 gene is transcribed and translated as a single inactive protein. This protein is cleaved by a furin-like convertase in the trans-golgi network before it reaches the plasma membrane to yield an active form. Cleavage results in a C-terminal fragment and a N-terminal fragment, linked by disulfide bridges. Following ligand binding, it is first cleaved by ADAM17 metallopeptidase to yield a membrane-associated intermediate fragment. This fragment is then cleaved by presenilin dependent gamma-secretase to release a Notch-derived peptide containing the intracellular domain from the membrane (see Notch activation diagram).
Protein modifications:
  • Phosphorylation: Different phosphorylation processes are important for regulating Notch2 activity. Only GSK3beta has been found to phosphorylate Notch2 in 32D-myeloid cells.
  • Glycosylation: fringe glycosyl-transferases modify the extracellular domain of Notch2 by glycosylation.
  • Expression Expressed in the brain, heart, kidney, spleen (hematopoietic cells,T-cells, B-cells and mast cells), lung, intestine, skeletal muscle and liver (hepatic cells and bile duct cells), ameloblasts.
    Localisation Type I membrane protein. Following proteolytical processing it is translocated to the nucleus.
    Function Physiological receptor for membrane-bound ligands jagged1, jagged2 and delta1 to regulate cell-fate determination. Upon ligand activation, Notch intracellular domain forms a transcriptional activator complex with RBP-j kappa and Mastermind proteins and activates genes of the hairy/enhancer of split (hes) family. Notch2 behaves very similar to Notch1 at the biochemical level, and in fact, C-terminal intracellular region of Notch1 can functionally replace that of Notch2 in vivo. However specific functions, specific expression patterns and embryonic lethality of single mutant mice indicate that both proteins are not redundant.
    Biological functions strictly associated to Notch2 are:
  • Development of kidney (proximal nephron structures: podocytes and proximal convoluted tubules).
  • B-cell differentiation: involved in the final stages of B-cell maturation at the marginal zone of the spleen and expression of CD23 in B-CLL (B-Cell Chronic Lymphoblastic leukaemia).
  • T-cell maturation: later stages of T cell development, induction of CD8+ cells.
  • Notch2 is also required for formation of the placental circulatory system.
  • Homology Degree of amino acid identity between Notch1 and Notch2 proteins: overall, 56%; EGF-like repeats, 58%; LNR,58%; CDC10, 76% and PEST, 79%.

    Mutations

    Germinal Two different mutations segregating in two families affected by Alagille syndrome: One mutation results in partial deletion of the intracellular domain including 4 ankyrin repeats, the second mutation affects EGF repeat 11.

    Implicated in

    Entity Alagille syndrome (AGS)
    Disease Alagille syndrome (AGS) is a dominant multisystem disorder defined clinically by bile duct paucity and cholestasis in association with cardiac, skeletal and ophthalmologic manifestations with less-frequent clinical involvement of renal and vascular systems. 94% of affected individuals have mutations in the Jagged1 gene.
    Oncogenesis Notch2 intracellular domain (active Notch2) has neoplastic transformation capacities.
      
    Entity B-Cell Chronic Lymphoblastic Leukemia (B-CLL).
    Oncogenesis Function: upregulation of CD23, which has been correlated with high cell viability and inhibition of apoptosis in B-CLL.
      
    Entity Embryonal brain tumors, medulloblastoma
    Prognosis Target gene hes1 expression correlates with shorter patient survival.
    Oncogenesis Loss of heterozygosity of Notch2 results in positive survival of Oligodendrioma and glioblastoma.
    Amplification in 15% of 40 analyzed embryonal brain tumors.
      
    Entity Melanoma
    Oncogenesis Amplification of 1p12 in melanoma cell lines
      
    Entity Lung carcinoma
    Oncogenesis Amplification in 9 of 12 samples of squamous lung carcinoma.
      
    Entity Breast carcinoma
    Oncogenesis Putative role of Notch2 as tumor suppressor since upregulation of its expression is associated with survival, and activated Notch2 induces apoptosis in breast cancer xenografts.
      

    External links

    Nomenclature
    HGNCNOTCH2   7882
    Entrez_GeneNOTCH2  4853  Notch homolog 2 (Drosophila)
    Cards
    AtlasNOTCH2ID41556ch1p12
    GeneCardsNOTCH2
    EnsemblNOTCH2 [Search_View]   ENSG00000134250 [Gene_View]
    GenatlasNOTCH2
    GeneLynxNOTCH2
    eGenomeNOTCH2
    euGene4853
    Genomic and cartography
    GoldenPathNOTCH2  -  1p12   chr1:120255699-120413799 -  1p13-p11   [Description]    (hg18-Mar_2006)
    EnsemblNOTCH2 - 1p13-p11 [CytoView]
    NCBIMapview
    OMIMDisease map [OMIM]
    HomoloGeneNOTCH2
    Gene and transcription
    GenbankAF308601 [ ENTREZ ]
    GenbankAF315356 [ ENTREZ ]
    GenbankAK027869 [ ENTREZ ]
    GenbankAK307843 [ ENTREZ ]
    GenbankAL049386 [ ENTREZ ]
    RefSeqNM_024408 [ SRS ]    NM_024408 [ ENTREZ ]
    RefSeqAC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
    RefSeqAC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
    RefSeqNC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
    RefSeqNG_008163 [ SRS ]    NG_008163 [ ENTREZ ]
    RefSeqNT_019273 [ SRS ]    NT_019273 [ ENTREZ ]
    RefSeqNW_001838594 [ SRS ]    NW_001838594 [ ENTREZ ]
    RefSeqNW_922462 [ SRS ]    NW_922462 [ ENTREZ ]
    AceViewNOTCH2 AceView - NCBI
    UnigeneHs.487360 [ SRS ]    Hs.487360 [ NCBI ]     HS487360 [ spliceNest ]
    Fast-db18102 (alternative variants)
    Protein : pattern, domain, 3D structure
    SwissProtQ04721 [ SRS]    Q04721 [ EXPASY ]     Q04721 [ INTERPRO ]     Q04721 [ UNIPROT ]
    PrositePS50297 ANK_REP_REGION [ SRS ]    PS50297 ANK_REP_REGION [ Expasy ]
    PrositePS50088 ANK_REPEAT [ SRS ]    PS50088 ANK_REPEAT [ Expasy ]
    PrositePS00010 ASX_HYDROXYL [ SRS ]    PS00010 ASX_HYDROXYL [ Expasy ]
    PrositePS00022 EGF_1 [ SRS ]    PS00022 EGF_1 [ Expasy ]
    PrositePS01186 EGF_2 [ SRS ]    PS01186 EGF_2 [ Expasy ]
    PrositePS50026 EGF_3 [ SRS ]    PS50026 EGF_3 [ Expasy ]
    PrositePS01187 EGF_CA [ SRS ]    PS01187 EGF_CA [ Expasy ]
    PrositePS50258 LNR [ SRS ]    PS50258 LNR [ Expasy ]
    InterproIPR002110 ANK [ SRS ]    IPR002110 ANK [ EBI ]
    InterproIPR006210 EGF [ SRS ]    IPR006210 EGF [ EBI ]
    InterproIPR000152 EGF-type_Asp/Asn_hydroxyl_CS [ SRS ]    IPR000152 EGF-type_Asp/Asn_hydroxyl_CS [ EBI ]
    InterproIPR001438 EGF_2 [ SRS ]    IPR001438 EGF_2 [ EBI ]
    InterproIPR000742 EGF_3 [ SRS ]    IPR000742 EGF_3 [ EBI ]
    InterproIPR001881 EGF_Ca_bd [ SRS ]    IPR001881 EGF_Ca_bd [ EBI ]
    InterproIPR013091 EGF_Ca_bd_2 [ SRS ]    IPR013091 EGF_Ca_bd_2 [ EBI ]
    InterproIPR006209 EGF_like [ SRS ]    IPR006209 EGF_like [ EBI ]
    InterproIPR013032 EGF_like_reg_CS [ SRS ]    IPR013032 EGF_like_reg_CS [ EBI ]
    InterproIPR008297 Notch [ SRS ]    IPR008297 Notch [ EBI ]
    InterproIPR010660 Notch_NOD [ SRS ]    IPR010660 Notch_NOD [ EBI ]
    InterproIPR011656 Notch_NODP [ SRS ]    IPR011656 Notch_NODP [ EBI ]
    InterproIPR000800 Notch_region [ SRS ]    IPR000800 Notch_region [ EBI ]
    CluSTrQ04721
    PfamPF00023 Ank [ SRS ]    PF00023 Ank [ Sanger ]    pfam00023 [ NCBI-CDD ]
    PfamPF00008 EGF [ SRS ]    PF00008 EGF [ Sanger ]    pfam00008 [ NCBI-CDD ]
    PfamPF07645 EGF_CA [ SRS ]    PF07645 EGF_CA [ Sanger ]    pfam07645 [ NCBI-CDD ]
    PfamPF06816 NOD [ SRS ]    PF06816 NOD [ Sanger ]    pfam06816 [ NCBI-CDD ]
    PfamPF07684 NODP [ SRS ]    PF07684 NODP [ Sanger ]    pfam07684 [ NCBI-CDD ]
    PfamPF00066 Notch [ SRS ]    PF00066 Notch [ Sanger ]    pfam00066 [ NCBI-CDD ]
    SmartSM00248 ANK [EMBL]
    SmartSM00181 EGF [EMBL]
    SmartSM00179 EGF_CA [EMBL]
    SmartSM00004 NL [EMBL]
    BlocksQ04721
    PDB2OO4 [ SRS ]    2OO4 [ PdbSum ],   2OO4 [ IMB ]   2OO4 [ RSDB ]
    HPRD02606
    Protein Interaction databases
    DIPQ04721
    IntActQ04721
    Polymorphism : SNP, mutations, diseases
    OMIM600275;610205    [ map ]   
    GENECLINICS600275;610205
    SNPNOTCH2 [dbSNP-NCBI]  
    SNPNM_024408 [SNP-NCI]  
    SNPNOTCH2 [GeneSNPs - Utah]  NOTCH2] [HGBASE - SRS]
    HAPMAPNOTCH2 [HAPMAP]  
    COSMICNOTCH2 [Somatic mutation (COSMIC-CGP-Sanger)]  
    HGMDNOTCH2
    General knowledge
    Family BrowserNOTCH2 [UCSC Family Browser]
    SOURCENM_024408
    SMDHs.487360
    SAGEHs.487360
    GOcell fate determination [Amigo]  cell fate determination
    GOligand-regulated transcription factor activity [Amigo]  ligand-regulated transcription factor activity
    GOreceptor activity [Amigo]  receptor activity
    GOcalcium ion binding [Amigo]  calcium ion binding
    GOprotein binding [Amigo]  protein binding
    GOnucleus [Amigo]  nucleus
    GOplasma membrane [Amigo]  plasma membrane
    GOintegral to plasma membrane [Amigo]  integral to plasma membrane
    GOtranscription [Amigo]  transcription
    GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
    GOanti-apoptosis [Amigo]  anti-apoptosis
    GOinduction of apoptosis [Amigo]  induction of apoptosis
    GOcell cycle arrest [Amigo]  cell cycle arrest
    GONotch signaling pathway [Amigo]  Notch signaling pathway
    GOmulticellular organismal development [Amigo]  multicellular organismal development
    GOnervous system development [Amigo]  nervous system development
    GOnegative regulation of cell proliferation [Amigo]  negative regulation of cell proliferation
    GOorgan morphogenesis [Amigo]  organ morphogenesis
    GOcell surface [Amigo]  cell surface
    GOcell growth [Amigo]  cell growth
    GOstem cell maintenance [Amigo]  stem cell maintenance
    GOhemopoiesis [Amigo]  hemopoiesis
    GOcell differentiation [Amigo]  cell differentiation
    GOpositive regulation of Ras protein signal transduction [Amigo]  positive regulation of Ras protein signal transduction
    GOprotein heterodimerization activity [Amigo]  protein heterodimerization activity
    GOregulation of developmental process [Amigo]  regulation of developmental process
    BIOCARTASegmentation Clock    [Genes]
    KEGGDorso-ventral axis formation
    KEGGNotch signaling pathway
    PubGeneNOTCH2
    TreeFamNOTCH2
    CTD4853 [Comparative ToxicoGenomics Database]
    Other databases
    Probes
    ProbeNOTCH2 Related clones (RZPD - Berlin)
    PubMed
    PubMed52 Pubmed reference(s) in Entrez

    Bibliography

    Notch2: a second mammalian Notch gene.
    Weinmaster G, Roberts VJ, Lemke G.
    Development. 1992 Dec;116(4):931-41.
    PMID 1295745
     
    Neoplastic transformation by truncated alleles of human NOTCH1/TAN1 and NOTCH2.
    Capobianco AJ, Zagouras P, Blaumueller CM, Artavanis-Tsakonas S, Bishop JM.
    Mol Cell Biol. 1997 Nov;17(11):6265-73.
    PMID 9343387
     
    Notch1 and Notch2 inhibit myeloid differentiation in response to different cytokines.
    Bigas A, Martin DI, Milner LA.
    Mol Cell Biol. 1998 Apr;18(4):2324-33.
    PMID 9528802
     
    Mutation in ankyrin repeats of the mouse Notch2 gene induces early embryonic lethality.
    Hamada Y, Kadokawa Y, Okabe M, Ikawa M, Coleman JR, Tsujimoto Y.
    Development. 1999 Aug;126(15):3415-24.
    PMID 10393120
     
    Binding of Delta1, Jagged1, and Jagged2 to Notch2 rapidly induces cleavage, nuclear translocation, and
    Shimizu K, Chiba S, Hosoya N, Kumano K, Saito T, Kurokawa M, Kanda Y, Hamada Y, Hirai H.
    Mol Cell Biol. 2000 Sep;20(18):6913-22.
    PMID 10958687
     
    Murine notch homologs (N1-4) undergo presenilin-dependent proteolysis.
    Saxena MT, Schroeter EH, Mumm JS, Kopan R.
    J Biol Chem. 2001 Oct 26;276(43):40268-73.
    PMID 11518718
     
    Manic fringe and lunatic fringe modify different sites of the Notch2 extracellular region, resulting in different
    Shimizu K, Chiba S, Saito T, Kumano K, Takahashi T, Hirai H.
    J Biol Chem. 2001 Jul 13;276(28):25753-8.
    PMID 11346656
     
    Notch2 is involved in the overexpression of CD23 in B-cell chronic lymphocytic leukemia.
    Hubmann R, Schwarzmeier JD, Shehata M, Hilgarth M, Duechler M, Dettke M, Berger R.
    Blood. 2002 May 15;99(10):3742-7.
    PMID 11986231
     
    Phosphorylation by glycogen synthase kinase-3 beta down-regulates Notch activity, a link for Notch and Wnt
    Espinosa L, Inglés-Esteve J, Aguilera C, Bigas A.
    J Biol Chem. 2003 Aug 22;278(34):32227-35.
    PMID 12794074
     
    Notch2 is preferentially expressed in mature B cells and indispensable for marginal zone B lineage development.
    Saito T, Chiba S, Ichikawa M, Kunisato A, Asai T, Shimizu K, Yamaguchi T, Yamamoto G, Seo S, Kumano K, Nakagami-Yamaguchi E, Hamada Y, Aizawa S, Hirai H.
    Immunity. 2003 May;18(5):675-85.
    PMID 12753744
     
    Activated Notch2 potentiates CD8 lineage maturation and promotes the selective development of B1 B cells.
    Witt CM, Hurez V, Swindle CS, Hamada Y, Klug CA.
    Mol Cell Biol. 2003 Dec;23(23):8637-50.
    PMID 14612407
     
    Notch1 and notch2 have opposite effects on embryonal brain tumor growth.
    Fan X, Mikolaenko I, Elhassan I, Ni X, Wang Y, Ball D, Brat DJ, Perry A, Eberhart CG.
    Cancer Res. 2004 Nov 1;64(21):7787-93.
    PMID 15520184
     
    Involvement of multiple developmental genes on chromosome 1p in lung tumorigenesis.
    Garnis C, Campbell J, Davies JJ, Macaulay C, Lam S, Lam WL.
    Hum Mol Genet. 2005 Feb 15;14(4):475-82.
    PMID 15615770
     
    Notch1 and 2 cooperate in limb ectoderm to receive an early Jagged2 signal regulating interdigital apoptosis.
    Pan Y, Liu Z, Shen J, Kopan R.
    Dev Biol. 2005 Oct 15;286(2):472-82.
    PMID 16169548
     
    Loss of NOTCH2 positively predicts survival in subgroups of human glial brain tumors.
    Boulay JL, Miserez AR, Zweifel C, Sivasankaran B, Kana V, Ghaffari A, Luyken C, Sabel M, Zerrouqi A, Wasner M, Van Meir E, Tolnay M, Reifenberger G, Merlo A.
    PLoS ONE. 2007 Jun 27;2(6):e576.
    PMID 17593975
     
    Notch2, but not Notch1, is required for proximal fate acquisition in the mammalian nephron.
    Cheng HT, Kim M, Valerius MT, Surendran K, Schuster-Gossler K, Gossler A, McMahon AP, Kopan R.
    Development. 2007 Feb;134(4):801-11.
    PMID 17229764
     
    Notch2 is required for formation of the placental circulatory system, but not for cell-type specification in the
    Hamada Y, Hiroe T, Suzuki Y, Oda M, Tsujimoto Y, Coleman JR, Tanaka S.
    Differentiation. 2007 Mar;75(3):268-78.
    PMID 17359302
     
    Synergism between NF-kappa B1/p50 and Notch2 during the development of marginal zone B lymphocytes.
    Moran ST, Cariappa A, Liu H, Muir B, Sgroi D, Boboila C, Pillai S.
    J Immunol. 2007 Jul 1;179(1):195-200.
    PMID 17579038
     
    Notch2 signaling induces apoptosis and inhibits human MDA-MB-231 xenograft growth.
    O’Neill CF, Urs S, Cinelli C, Lincoln A, Nadeau RJ, León R, Toher J, Mouta-Bellum C, Friesel RE, Liaw L.
    Am J Pathol. 2007 Sep;171(3):1023-36.
    PMID 17675579
     
    The transcriptional coactivator Maml1 is required for Notch2-mediated marginal zone B-cell development.
    Wu L, Maillard I, Nakamura M, Pear WS, Griffin JD.
    Blood. 2007 Nov 15;110(10):3618-23.
    PMID 17699740
     
    The possible correlation of Notch-1 and Notch-2 with clinical outcome and tumour clinicopathological parameters in human breast cancer.
    Parr C, Watkins G, Jiang WG.
    Int J Mol Med. 2004 Nov;14(5):779-86.
    PMID 15492845
     
    Notch2 signaling induces apoptosis and inhibits human MDA-MB-231 xenograft growth.
    O’Neill CF, Urs S, Cinelli C, Lincoln A, Nadeau RJ, León R, Toher J, Mouta-Bellum C, Friesel RE, Liaw L.
    Am J Pathol. 2007 Sep;171(3):1023-36.
    PMID 17675579
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written03-2008Anna Bigas, Lluis Espinosa
    Instituto de Investigación Biomédica de Bellvitge, IDIBELL, Barcelona, Spain

    Citation

    This paper should be referenced as such :
    Bigas A, Espinosa L . NOTCH2 (Notch homolog 2 (Drosophila)). Atlas Genet Cytogenet Oncol Haematol. March 2008 .
    URL : http://AtlasGeneticsOncology.org/Genes/NOTCH2ID41556ch1p12.html

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Mon Sep 29 18:43:19 2008


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