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NOTCH3 (Notch homolog 3 (Drosophila))

Identity

Other namesCADASIL
CASIL
HGNC (Hugo) NOTCH3
Location 19p13.12
Location_base_pair Starts at 15131444 and ends at 15172792 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order Gene orientation: telomere-3¹ NOTCH3 5¹-centromere.

DNA/RNA

Description The Notch3 gene is encoded by 33 exons spanning 41.35 kb that are located on Chromosome 19p13.12.
Transcription 8.089 Kb mRNA, the coding sequence is from 77 bp-7042 bp.

Protein

Note 2321 amino acids with a predicted molecular mass of 243.66 Kd.
Single-pass type I membrane protein. Contain 1 signal peptide, 36 extracellular EGF repeats, 1 single transmembrane domain, and 2 PEST domains.
Synthesized in the endoplasmic reticulum as an inactive form, which is cleaved by a furin-like convertase in the trans-Golgi complex before it reaches the plasma membrane to yield an active, ligand-accessible form. Cleavage results in a transmembrane Notch subunit (NTM) and an extracellular Notch subunit (ECN).
Description Notch3 is a cell surface receptor for membrane-bound ligands including Jagged1, Jagged2, Delta-like1, Delta-like3 and Delta-like4. It is activated by ligand-receptor interaction, which triggers two successive proteolytic cleavages that release the active intracellular domain of Notch (NICD). The NICD translocates to the nucleus, where it interacts with CSL (CBF1/RBP-J kappa, Suppressor of Hairless, LAG-1). Binding of NICD to CSL displaces corepressor complexes and recruits coactivators, leading to transcription from promoters containing CSL-binding elements. The Notch3 target genes participate in wide spectrum of biological processes such as differentiation, proliferation and apoptosis.
Expression Expressed in certain types of fetal and adult tissues.
Localisation Mainly located at cell membrane. Following proteolytic events upon ligand binding, its intracellular domain is translocated into the nuclei.
Function Notch3 is a membrane receptor that mediates cell-cell interactions to facilitate cell differentiation, growth and cell death.

Mutations

Germinal Mutation in NOTCH3 is associated with cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL). CADASIL is an adult-onset disorder characterized by recurrent ischemic strokes, dementia, and premature death. It affects predominantly the small cerebral arteries, leads to progressive degeneration of vasculature smooth-muscle cells.
Disease-associated mutations are distributed throughout the epidermal growth factor-like repeats (EGFRs) that compose the extracellular domain of the Notch3 receptor and result in a loss or a gain of a cysteine residue in one of these EGFRs. Mutation hotspots were located at the two exons encoding the first five EGFRs. The findings suggested that aberrant dimerization of NOTCH3, due to abnormal disulfide bridging with NOTCH3 molecule or another protein, may be involved in the pathogenesis of CADASIL.
Somatic Somatic sequence mutations, gene translocation and amplification of chromosomal locus involved Notch3 gene were identified in T-cell lymphoma, non-small-cell lung cancer and ovarian cancer, respectively.

Implicated in

Entity Non-small-cell lung cancer
Cytogenetics t(15;19)(q11;p13)
Hybrid/Mutated Gene A breakpoint was localized to the cosmid R31546. The breakpoint was found about 50 kilobases (kb) upstream of the Notch3 and within the 3' untranslated region of a putative gene, Hunk1, on 19p. Translocation of chromosome 19p was also found in several other chromosomes, including chromosomes 12q, 14q, 17q, 4q, and 6q. Overexpression of Notch3 full-length mRNA is associated with a 19p translocation.
Oncogenesis The translocation is associated with Notch3 over-expression. Transgenic mouse study by constitutive expression of intracellular domain of Notch3 in lung epithelium using surfactant protein C promoter/enhancer resulted in inhibited differentiation of epithelial lung cell, altered lung morphology, and perinatal lethality in the transgenic mice.
  
Entity Ovarian cancer-serous type
Cytogenetics Chromosome 19p13.12 amplification harboring the Notch3 gene is frequently identified in ovarian cancer.
Oncogenesis In vitro study demonstrated that cell lines with Notch3 over-expression are more sensitive to the anti-proliferative effect of Notch3 signaling pathway inhibitors including gamma-secretase inhibitor and Notch3-specific siRNA.
  

External links

Nomenclature
HGNC (Hugo)NOTCH3   7883
Entrez_Gene (NCBI)NOTCH3  4854  Notch homolog 3 (Drosophila)
Cards
AtlasNOTCH3ID41557ch19p13
GeneCards (Weizmann)NOTCH3
Ensembl (Hinxton)ENSG00000074181 [Gene_View]  NOTCH3 [Vega]
AceView (NCBI)NOTCH3
Genatlas (Paris)NOTCH3
euGene (Indiana)4854
SOURCE (Stanford)NM_000435
Gene Expression (Array Express) ENSG00000074181
Genomic and cartography
GoldenPath (UCSC)NOTCH3  -  19p13.12   chr19:15131444-15172792 -  19p13.2-p13.1   [Description]    (hg18-Mar_2006)
EnsemblNOTCH3 - 19p13.2-p13.1 [CytoView]
Mapping of homologs : NCBINOTCH3 [Mapview]
OMIM125310   600276   
Gene and transcription
Gene : Genbank (Entrez)AB209447 CR611252 DQ156540 DQ156541 DQ156542
Reference sequence (RefSeq transcript) :SRSNM_000435
Reference transcript : EntrezNM_000435
RefSeq genomic : SRSAC_000062 AC_000151 NC_000019 NG_009819 NT_011295 NW_001838484 NW_927195
RefSeq genomic : EntrezAC_000062 AC_000151 NC_000019 NG_009819 NT_011295 NW_001838484 NW_927195
Consensus coding sequences : CCDS NCBINOTCH3
Cluster EST : UnigeneHs.8546 [ SRS ] Hs.8546 [ NCBI ]
Alternative Splicing : Fast-db (Paris)8129
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9UM47 (SRS) Q9UM47 (Expasy) Q9UM47 (Uniprot)
With graphics : InterProQ9UM47
Splice isoforms : VarSplice FASTAQ9UM47(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    LNR (PS50258)   
Domain pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    LNR (PS50258)   
Domains : Interpro (SRS)Ankyrin_rpt    Ankyrin_rpt-contain_dom    EGF    EGF-like    EGF-like_reg_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_2    EGF_3    EGF_Ca_bd    EGF_Ca_bd_2    EGF_Ca_bd_CS    Notch    Notch_dom    Notch_NOD_dom    Notch_NODP_dom   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    EGF    EGF-like    EGF-like_reg_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_2    EGF_3    EGF_Ca_bd    EGF_Ca_bd_2    EGF_Ca_bd_CS    Notch    Notch_dom    Notch_NOD_dom    Notch_NODP_dom   
Related proteins : CluSTrQ9UM47
Domain families : Pfam SRSAnk (PF00023)    EGF (PF00008)    EGF_CA (PF07645)    NOD (PF06816)    NODP (PF07684)    Notch (PF00066)   
Domain families : Pfam SangerAnk (PF00023)    EGF (PF00008)    EGF_CA (PF07645)    NOD (PF06816)    NODP (PF07684)    Notch (PF00066)   
Domain families : Pfam NCBIpfam00023    pfam00008    pfam07645    pfam06816    pfam07684    pfam00066   
Domain families : Smart EMBLANK (SM00248)  EGF (SM00181)  EGF_CA (SM00179)  NL (SM00004)  
Blocks (Seattle)Q9UM47
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD02607
Protein Interaction databases
DIP (DOE-UCLA)Q9UM47
IntAct (EBI)Q9UM47
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBINOTCH3
SNP : GeneSNP UtahNOTCH3
SNP : HGBaseNOTCH3
Genetic variants : HAPMAPNOTCH3
Somatic Mutations in Cancer : COSMICNOTCH3 
Mutations and Diseases : HGMDNOTCH3
Hereditary diseases : OMIM125310    600276   
Hereditary diseases : GENETests125310    600276   
Diseases : Genetic AssociationNOTCH3
General knowledge
Homologs : HomoloGeneNOTCH3
Homology/Alignments : Family Browser UCSCNOTCH3
Phylogenetic Trees/Animal Genes : TreeFamNOTCH3
Chemical/Protein Interactions : CTD4854
Keywords Ontology : AmiGOreceptor activity  calcium ion binding  protein binding  nucleus  plasma membrane  Notch signaling pathway  multicellular organismal development  integral to membrane  forebrain development  tissue regeneration  regulation of transcription  negative regulation of neuron differentiation  neuron fate commitment  regulation of developmental process  
Keywords Ontology : EGO-EBIreceptor activity  calcium ion binding  protein binding  nucleus  plasma membrane  Notch signaling pathway  multicellular organismal development  integral to membrane  forebrain development  tissue regeneration  regulation of transcription  negative regulation of neuron differentiation  neuron fate commitment  regulation of developmental process  
Pathways : BIOCARTA
Pathways : KEGGDorso-ventral axis formationNotch signaling pathway
Other databases
Probes
Probes : ImagenesNOTCH3 Related clones (RZPD - Berlin)
Literature
PubMed105 Pubmed reference(s) in Entrez
PubGeneNOTCH3

Bibliography

Chromosome 19 translocation, overexpression of Notch3, and human lung cancer.
Dang TP, Gazdar AF, Virmani AK, Sepetavec T, Hande KR, Minna JD, Roberts JR, Carbone DP
Journal of the National Cancer Institute. 2000 ; 92 (16) : 1355-1357.
PMID 10944559
 
Constitutive activation of Notch3 inhibits terminal epithelial differentiation in lungs of transgenic mice.
Dang TP, Eichenberger S, Gonzalez A, Olson S, Carbone DP
Oncogene. 2003 ; 22 (13) : 1988-1997.
PMID 12673204
 
Notch3 gene amplification in ovarian cancer.
Park JT, Li M, Nakayama K, Mao TL, Davidson B, Zhang Z, Kurman RJ, Eberhart CG, Shih IeM, Wang TL
Cancer research. 2006 ; 66 (12) : 6312-6318.
PMID 16778208
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2007Tian-Li Wang
Departments of Gynecology/Obstetrics and Oncology Johns Hopkins Medical Institutions CRBII, Rm: 306 1550 Orleans Street Baltimore, MD 21231, USA

Citation

This paper should be referenced as such :
Wang TL . NOTCH3 (Notch homolog 3 (Drosophila)). Atlas Genet Cytogenet Oncol Haematol. August 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/NOTCH3ID41557ch19p13.html

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indexed on : Sat Feb 27 10:51:50 CET 2010

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