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OLIG2 oligodendrocyte lineage transcription factor 2

Identity

Other namesRK17
Olg-2
Bhlhb1
RACK17
HGNC:13226
PRKCBP2
BHLHB1
HGNC (Hugo) OLIG2
Location 21q22.11
Location_base_pair Starts at 33320109 and ends at 33323370 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Note OLIG2 is an essential transcriptional regulator in motoneuron and oligodendrocyte development.

Protein

Description 329 amino acids; 32 kDa; contains 1 basic helix-loop-helix DNA-binding domain (bHLH).
Expression Olig2 is expressed in the ventral thalamus of developing mice.
Function Required for oligodendrocyte and motor neuron specification in the spinal cord.

Implicated in

Entity T-cell lymphoma
Cytogenetics Translocation t(14;21)(q11.2;q22)
Hybrid/Mutated Gene T-cell receptor promoter translocated upstream of OLIG2.
Abnormal Protein none
  
Entity Brain cancer
Disease Oligodendroglioma, astrocytoma, glioblastoma.
Prognosis variable
Cytogenetics No known genetic abnormalities in OLIG2.
Hybrid/Mutated Gene n/a
Oncogenesis OLIG expression in brain cancer raises possibilities that it could regulate behavior of tumor cell populations but this has not been demonstrated.
  

External links

Nomenclature
HGNC (Hugo)OLIG2   9398
Entrez_Gene (NCBI)OLIG2  10215  oligodendrocyte lineage transcription factor 2
Cards
AtlasOLIG2ID236
GeneCards (Weizmann)OLIG2
Ensembl (Hinxton)ENSG00000205927 [Gene_View]  OLIG2 [Vega]
AceView (NCBI)OLIG2
Genatlas (Paris)OLIG2
euGene (Indiana)10215
SOURCE (Stanford)NM_005806
Gene Expression (Array Express) ENSG00000205927
Genomic and cartography
GoldenPath (UCSC)OLIG2  -  21q22.11   chr21:33320109-33323370 +  21q22.11   [Description]    (hg18-Mar_2006)
EnsemblOLIG2 - 21q22.11 [CytoView]
Mapping of homologs : NCBIOLIG2 [Mapview]
OMIM606386   
Gene and transcription
Gene : Genbank (Entrez)AF221520 AK091462 AU130620 BC034681 BC036245
Reference sequence (RefSeq transcript) :SRSNM_005806
Reference transcript : EntrezNM_005806
RefSeq genomic : SRSAC_000064 AC_000153 NC_000021 NG_011834 NT_011512 NW_001838706 NW_927384
RefSeq genomic : EntrezAC_000064 AC_000153 NC_000021 NG_011834 NT_011512 NW_001838706 NW_927384
Consensus coding sequences : CCDS NCBIOLIG2
Cluster EST : UnigeneHs.176977 [ SRS ] Hs.176977 [ NCBI ]
Alternative Splicing : Fast-db (Paris)1881
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ13516 (SRS) Q13516 (Expasy) Q13516 (Uniprot)
With graphics : InterProQ13516
Splice isoforms : VarSplice FASTAQ13516(VarSplice FASTA)
Domaine pattern : Prosite (SRS)HLH (PS50888)   
Domain pattern : Prosite (Expaxy)HLH (PS50888)   
Domains : Interpro (SRS)HLH_DNA-bd_dom    HLH_DNA_bd   
Domains : Interpro (EBI)HLH_DNA-bd_dom    HLH_DNA_bd   
Related proteins : CluSTrQ13516
Domain families : Pfam SRSHLH (PF00010)   
Domain families : Pfam SangerHLH (PF00010)   
Domain families : Pfam NCBIpfam00010   
Domain families : Smart EMBLHLH (SM00353)  
Blocks (Seattle)Q13516
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD07334
Protein Interaction databases
DIP (DOE-UCLA)Q13516
IntAct (EBI)Q13516
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIOLIG2
SNP : GeneSNP UtahOLIG2
SNP : HGBaseOLIG2
Genetic variants : HAPMAPOLIG2
Cancer Gene: CensusOLIG2 
Somatic Mutations in Cancer : COSMICOLIG2 
Mutations and Diseases : HGMDOLIG2
Hereditary diseases : OMIM606386   
Hereditary diseases : GENETests606386   
Diseases : Genetic AssociationOLIG2
General knowledge
Homologs : HomoloGeneOLIG2
Homology/Alignments : Family Browser UCSCOLIG2
Phylogenetic Trees/Animal Genes : TreeFamOLIG2
Chemical/Protein Interactions : CTD10215
Keywords Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  RNA polymerase II transcription factor activity, enhancer binding  protein binding  nucleus  nucleolus  cytoplasm  plasma membrane  regulation of transcription, DNA-dependent  multicellular organismal development  nervous system development  spinal cord oligodendrocyte cell fate specification  transcription regulator activity  myelination  protein homodimerization activity  neuron fate commitment  
Keywords Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  RNA polymerase II transcription factor activity, enhancer binding  protein binding  nucleus  nucleolus  cytoplasm  plasma membrane  regulation of transcription, DNA-dependent  multicellular organismal development  nervous system development  spinal cord oligodendrocyte cell fate specification  transcription regulator activity  myelination  protein homodimerization activity  neuron fate commitment  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesOLIG2 Related clones (RZPD - Berlin)
Literature
PubMed35 Pubmed reference(s) in Entrez
PubGeneOLIG2

Bibliography

The t(14;21)(q11.2;q22) chromosomal translocation associated with T-cell acute lymphoblastic leukemia activates the BHLHB1 gene.
Wang J, Jani-Sait SN, Escalon EA, Carroll AJ, de Jong PJ, Kirsch IR, Aplan PD
Proceedings of the National Academy of Sciences of the United States of America. 2000 ; 97 (7) : 3497-3502.
PMID 10737801
 
Oligodendrocyte lineage genes (OLIG) as molecular markers for human glial brain tumors.
Lu QR, Park JK, Noll E, Chan JA, Alberta J, Yuk D, Alzamora MG, Louis DN, Stiles CD, Rowitch DH, Black PM
Proceedings of the National Academy of Sciences of the United States of America. 2001 ; 98 (19) : 10851-10856.
PMID 11526205
 
OLIG2 as a specific marker of oligodendroglial tumour cells.
Marie Y, Sanson M, Mokhtari K, Leuraud P, Kujas M, Delattre JY, Poirier J, Zalc B, Hoang-Xuan K
Lancet. 2001 ; 358 (9278) : 298-300.
PMID 11498220
 
OLIG-1 and 2 gene expression and oligodendroglial tumours.
Hoang-Xuan K, Aguirre-Cruz L, Mokhtari K, Marie Y, Sanson M
Neuropathology and applied neurobiology. 2002 ; 28 (2) : 89-94.
PMID 11972795
 
Immunolocalization of the oligodendrocyte transcription factor 1 (Olig1) in brain tumors.
Azzarelli B, Miravalle L, Vidal R
Journal of neuropathology and experimental neurology. 2004 ; 63 (2) : 170-179.
PMID 14989603
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2004David Rowitch
Department of Pediatric Oncology, Dana-Farber Cancer Institute, Dana 640D, 44 Binney Street, Boston, MA 02115, USA

Citation

This paper should be referenced as such :
Rowitch D . OLIG2 oligodendrocyte lineage transcription factor 2. Atlas Genet Cytogenet Oncol Haematol. May 2004 .
URL : http://AtlasGeneticsOncology.org/Genes/OLIG2ID236.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:53:03 CET 2010

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