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PAK1 (p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast))

Identity

Other namesAlpha-PAK
MGC130000
MGC130001
P65-PAK
PAK-1
PAKalpha
Hugo PAK1
Location 11q13.5
Local_order centromere - MYO7A ­ GDPD4 ­ LOC387791 ­ PAK1 ­ DFFZp434E1119 ­ FLJ38894 ­ AQP11
Note PAK1 encodes a serine/threonine specific protein kinase that is a member of the PAK branch of the STE20 family. PAK1 plays a role in cell survival, polarity, and motility, and may have oncogenic function when overexpressed.

DNA/RNA

 
  The alignment of PAK1 mRNA to its genomic sequence.
Description The PAK1 gene contains 14 exons. The sizes of the exons 1-14 are 189, 100, 129, 147, 37, 119, 174, 63, 48, 112, 117, 99, 196, 137, and 86 bps. Exon 2 contains the translation initation ATG, and a few additional codons. Exon 13 contains the stop codon. Other features of the PAK1 gene, such as promoters or enhancer elements, have not been described.
Transcription PAK1 expression is particularly high in the brain. Other tissues which have reasonably high levels of PAK1 expression include spleen and skeletal muscle. The mRNA size is 1945 bps.

Protein

 
Description PAK1 is a highly conserved serine/threonine protein kinase of 545 amino acids and is a member of the PAK group of the STE20 family of serine/threonine protein kinases. Pak1 is active in a monomeric form; the non-active form is an autoinhibited homodimer. Pak1 contains a regulatory N-terminal regulatory domain and C-terminal catalytic domain The regulatory domain consists of a p21 GTPase-binding domain (PBD), an inhibitory domain (PID); five SH3-domains; and one non-classical SH3-binding site for the PIX family of proteins (PXP). Pak1 binds to activated forms of the GTPases Cdc42 and Rac. Pak1 homodimerizes through a motif adjacent to the p21-binding domain, and is autoinhibited. Upon binding to Cdc42 or Rac, Pak1 is activated and autophosphorylates. Pak1 has dozens of substrates, activating cytoskeletal and transcription pathways that enhance cell motility, proliferation, and survival.
Expression PAK1 is highly expressed in epithelium of tongue and larynx and in thyroid gland, expression also found in central nervous system (brain).
Localisation Under basal conditions, Pak1 localizes to the cytosol. Upon growth factor stimulation, Pak1 is recruited to the plasma membrane as well as the nucleus.
Function Cell survival and proliferation
Homology Similar to STE20 in budding yeast and PAK1 in fission yeast. Human PAK1 complements both these yeast genes.

Mutations

Note No mutations in the PAK1 gene have been reported

Implicated in

Entity Cancers
Disease There is emerging evidence that the Pak family may play a key role in several human malignancies, including breast, ovarian, head and neck, colon, thyroid, and renal cancer. In human breast cancer, the expression level of Pak1 correlates with the tumor grade, with higher expression in less differentiated ductal carcinomas of the breast (grade III tumors) than in grade II and grade I tumors. Pak1 overexpression is also associated with tamoxifen resistance in breast cancer. In human tumors, Pak1 is not itself activated by mutation: rather, Pak1 is overexpressed by unknown mechanisms. Pak1 may also play a role in transformation by Kaposi's sarcoma-associated herpes virus, which induces Kaposi's sarcoma and primary effusion lymphomas.
Prognosis Recently, it has been shown that the level of phosphorylated (activated) Pak1 Level in the cytoplasm correlates with shorter survival time in patients with glioblastoma. As noted above, Pak1 expression may also correlate with tamoxifen resistance in breast cancer.
  

External links

Nomenclature
HugoPAK1
GDBPAK1
Entrez_GenePAK1  5058  p21 protein (Cdc42/Rac)-activated kinase 1
Cards
AtlasPAK1ID41633ch11q13
GeneCardsPAK1
EnsemblPAK1 [Search_View]   ENSG00000149269 [Gene_View]
GenatlasPAK1
GeneLynxPAK1
eGenomePAK1
euGene5058
Genomic and cartography
GoldenPathPAK1  -  11q13.5   chr11:76710709-76862581 -  11q13-q14   [Description]    (hg18-Mar_2006)
EnsemblPAK1 - 11q13-q14 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGenePAK1
Gene and transcription
GenbankAF071884 [ ENTREZ ]
GenbankAK055228 [ ENTREZ ]
GenbankAK293098 [ ENTREZ ]
GenbankBC050377 [ ENTREZ ]
GenbankBC109298 [ ENTREZ ]
RefSeqNM_001128620 [ SRS ]    NM_001128620 [ ENTREZ ]
RefSeqNM_002576 [ SRS ]    NM_002576 [ ENTREZ ]
RefSeqAC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeqAC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeqNC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeqNT_033927 [ SRS ]    NT_033927 [ ENTREZ ]
RefSeqNW_001838028 [ SRS ]    NW_001838028 [ ENTREZ ]
RefSeqNW_925106 [ SRS ]    NW_925106 [ ENTREZ ]
AceViewPAK1 AceView - NCBI
UnigeneHs.435714 [ SRS ]    Hs.435714 [ NCBI ]     HS435714 [ spliceNest ]
Fast-db12220 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ13153 [ SRS]    Q13153 [ EXPASY ]     Q13153 [ INTERPRO ]
PrositePS50108 CRIB [ SRS ]    PS50108 CRIB [ Expasy ]
PrositePS00107 PROTEIN_KINASE_ATP [ SRS ]    PS00107 PROTEIN_KINASE_ATP [ Expasy ]
PrositePS50011 PROTEIN_KINASE_DOM [ SRS ]    PS50011 PROTEIN_KINASE_DOM [ Expasy ]
PrositePS00108 PROTEIN_KINASE_ST [ SRS ]    PS00108 PROTEIN_KINASE_ST [ Expasy ]
InterproIPR000095 PAK_box_Rho_bd [ SRS ]    IPR000095 PAK_box_Rho_bd [ EBI ]
InterproIPR015750 Pak_like [ SRS ]    IPR015750 Pak_like [ EBI ]
InterproIPR000719 Prot_kinase_core [ SRS ]    IPR000719 Prot_kinase_core [ EBI ]
InterproIPR017441 Protein_kinase_ATP_bd_CS [ SRS ]    IPR017441 Protein_kinase_ATP_bd_CS [ EBI ]
InterproIPR008271 Ser_thr_pkin_AS [ SRS ]    IPR008271 Ser_thr_pkin_AS [ EBI ]
InterproIPR002290 Ser_thr_pkinase [ SRS ]    IPR002290 Ser_thr_pkinase [ EBI ]
CluSTrQ13153
PfamPF00786 PBD [ SRS ]    PF00786 PBD [ Sanger ]    pfam00786 [ NCBI-CDD ]
SmartSM00285 PBD [EMBL]
SmartSM00220 S_TKc [EMBL]
ProdomPD000001 Prot_kinase[INRA-Toulouse]
ProdomQ13153 PAK1_HUMAN [ Domain structure ]   Q13153 PAK1_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ13153
PDBPAK1 [ SRS ]    PAK1 [ PdbSum ],   PAK1 [ IMB ]   PAK1 [ RSDB ]
HPRD03995
Protein Interaction databases
DIPQ13153
IntActQ13153
Polymorphism : SNP, mutations, diseases
OMIM602590    [ map ]   
GENECLINICS602590
SNPPAK1 [dbSNP-NCBI]  
SNPNM_001128620 [SNP-NCI]  
SNPNM_002576 [SNP-NCI]  
SNPPAK1 [GeneSNPs - Utah]  PAK1] [HGBASE - SRS]
HAPMAPPAK1 [HAPMAP]  
COSMICPAK1 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDPAK1
General knowledge
Family BrowserPAK1 [UCSC Family Browser]
SOURCENM_001128620
SOURCENM_002576
SMDHs.435714
SAGEHs.435714
Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.1 [ Enzyme-SRS ]   2.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   2.7.11.1 [ WIT ]
GOMAPKKK cascade [Amigo]  MAPKKK cascade
GOnucleotide binding [Amigo]  nucleotide binding
GOprotein serine/threonine kinase activity [Amigo]  protein serine/threonine kinase activity
GOprotein binding [Amigo]  protein binding
GOATP binding [Amigo]  ATP binding
GOcytoplasm [Amigo]  cytoplasm
GOplasma membrane [Amigo]  plasma membrane
GOapoptosis [Amigo]  apoptosis
GOER-nuclear signaling pathway [Amigo]  ER-nuclear signaling pathway
GOcytoskeleton organization and biogenesis [Amigo]  cytoskeleton organization and biogenesis
GOtransferase activity [Amigo]  transferase activity
GOcell junction [Amigo]  cell junction
GOpositive regulation of JNK activity [Amigo]  positive regulation of JNK activity
GOprotein amino acid autophosphorylation [Amigo]  protein amino acid autophosphorylation
BIOCARTAAngiotensin II mediated activation of JNK Pathway via Pyk2 dependent signaling    [Genes]
BIOCARTAInfluence of Ras and Rho proteins on G1 to S Transition    [Genes]
BIOCARTAAgrin in Postsynaptic Differentiation    [Genes]
BIOCARTARole of PI3K subunit p85 in regulation of Actin Organization and Cell Migration    [Genes]
BIOCARTAfMLP induced chemokine gene expression in HMC-1 cells    [Genes]
BIOCARTAFAS signaling pathway ( CD95 )    [Genes]
BIOCARTAMAPKinase Signaling Pathway    [Genes]
BIOCARTASignaling of Hepatocyte Growth Factor Receptor    [Genes]
BIOCARTARas-Independent pathway in NK cell-mediated cytotoxicity    [Genes]
BIOCARTALinks between Pyk2 and Map Kinases    [Genes]
BIOCARTARac 1 cell motility signaling pathway    [Genes]
BIOCARTATNFR1 Signaling Pathway    [Genes]
KEGGMAPK signaling pathway
KEGGAxon guidance
KEGGFocal adhesion
KEGGNatural killer cell mediated cytotoxicity
KEGGT cell receptor signaling pathway
KEGGRegulation of actin cytoskeleton
KEGGEpithelial cell signaling in Helicobacter pylori infection
PubGenePAK1
TreeFamPAK1
CTD5058 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbePAK1 Related clones (RZPD - Berlin)
PubMed
PubMed169 Pubmed reference(s) in LocusLink

Bibliography

A brain serine/threonine protein kinase activated by Cdc42 and Rac1.
Manser E, Leung T, Salihuddin H, Zhao ZS, Lim L
Nature. 1994 ; 367 (6458) : 40-46.
PMID 8107774
 
Emerging from the Pak: the p21-activated protein kinase family.
Sells MA, Chernoff J
Trends in cell biology. 1997 ; 7 (4) : 162-167.
PMID 17708935
 
Pak to the future.
Bagrodia S, Cerione RA
Trends in cell biology. 1999 ; 9 (9) : 350-355.
PMID 10461188
 
The Ste20 group kinases as regulators of MAP kinase cascades.
Dan I, Watanabe NM, Kusumi A
Trends in cell biology. 2001 ; 11 (5) : 220-230.
PMID 11316611
 
p21-activated kinases: three more join the Pak.
Jaffer ZM, Chernoff J
The international journal of biochemistry & cell biology. 2002 ; 34 (7) : 713-717.
PMID 11950587
 
Biology of the p21-activated kinases.
Bokoch GM
Annual review of biochemistry. 2003 ; 72 : 743-781.
PMID 12676796
 
The genetics of Pak.
Hofmann C, Shepelev M, Chernoff J
Journal of cell science. 2004 ; 117 (Pt 19) : 4343-4354.
PMID 15331659
 
p21-activated kinases in cancer.
Kumar R, Gururaj AE, Barnes CJ
Nature reviews. Cancer. 2006 ; 6 (6) : 459-471.
PMID 16723992
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written12-2007Dina Stepanova, Jonathan Chernoff
Fox Chase Cancer Center, 333 Cottman Ave, Philadelphia, PA 19111, USA

Citation

This paper should be referenced as such :
Stepanova D, Chernoff J . PAK1 (p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)). Atlas Genet Cytogenet Oncol Haematol. December 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/PAK1ID41633ch11q13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 14 17:48:09 2008


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