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ABCB1

Identity

Other namesPGY1 (P glycoprotein1/ multidrug resistance 1)
MDR1 (multidrug resistance 1)
HGNC (Hugo) ABCB1
Location 7q21.2
Location_base_pair Starts at 86970884 and ends at 87180500 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Description spans on a 120 kb genomic fragment; separated from MDR3 gene (which is transcribed in the same direction) by only 34 kb of intergenic DNA
Transcription 5 kb mRNA

Protein

Description the protein is called P-glycoprotein; 170 kDa transmembrane glycoprotein which includes 10-15 kDa of N-term glycosylation; the N-term half of the molecule contains 6 transmembrane domains, followed by a large cytoplasmic domain with an ATP binding site, and then a second section with 6 transmembrane domains and an ATP binding site which shows over 65% of amino acid similarity with the first half of the polypeptide
Expression normally expressed at secretory surface of a number of tissues, including biliary canaliculi, proximal tubules of the kidney, intestinal and colonic epithelium; hematopoietic stem cells express high levels of P-glycoprotein; overexpressed in many multidrug resistant cell lines and in tumor cells resistant to chemotherapy
Localisation mainly at the cell membrane, with a secondary localisation at the Golgi apparatus
Function the P-glycoprotein is an energy-dependent efflux pump involved in extrusion of many types of lypophilic coumpounds; it may acts in normal tissues as a protective mechanism against noxious xenobiotics and as a transporter of endogenous substrates; in tumour cells, the drug efflux pump results in a decrease in intracellular drug concentration
Homology closely related gene to MDR3 (also called PGY3), located at the same chromosomal site but not implicated in multidrug resistance; there are 3 murine homolog genes (mdr1, mdr2, mdr3) out of which only 2 (mdr1 and mdr3) are involved in multidrug resistance; member of a large superfamily of transmembrane transporter proteins named ATP Binding Cassette (ABC) transporters or Traffic ATPases; structural homology with other ABC transporter proteins (CFTR, MRP)

Implicated in

Entity tumor cells resistance
Disease tumor cells resistance to a wide variety of antineoplasic agents: doxorubicin, daunorubicin, vinblastine, vincristine, colchicine, actinomycine D, etoposide, tenoposide, mitoxantrone, homoharringtonine; this phenomenon is named "multidrug resistance" (MDR); P-glycoprotein is the main protein responsible for the MDR phenotype; however, other agents may be involved in MDR, independently or in association with P-glycoprotein: "multidrug resistant associated protein" (MRP), "lung resistance protein" (LRP), "anthracycline associated resistance protein" (ARX)
  
Entity leukemias
Disease In leukemia, MDR1 overexpression is observed in patients with a lower complete remission rate and with a shortening of overall survival; frequently associated with intermediate and poor prognosis karyotype; in ANLL, approximately 50% of patients are MDR positive at diagnosis (range 22-70%) and the MDR phenotype is more frequently observed in CD34+ leukemias; in ALL, the average number of MDR-positive cases is 22% at diagnosis
  
Entity tumour cell lines: in numerous continuous tumour cell lines which acquired experimentally a MDR phenotype when cultured with progressively increasing drug concentration, the acquisition of MDR was associated with hyperexpression of P-glycoprotein; for the higher levels of expression, southern blots revealed an increase in the number of copies of the MDR1 gene per cell
Cytogenetics the genomic amplification of MDR1 appears as extrachromosomic "double-minute chromosomes" (DM) or intrachromosomic "homogeneous staining regions" (HSR)
Oncogenesis amplification
  

External links

Nomenclature
HGNC (Hugo)ABCB1   40
Entrez_Gene (NCBI)ABCB1  5243  ATP-binding cassette, sub-family B (MDR/TAP), member 1
Cards
AtlasPGY1ID105
GeneCards (Weizmann)ABCB1
Ensembl (Hinxton)ENSG00000085563 [Gene_View]  ABCB1 [Vega]
AceView (NCBI)ABCB1
Genatlas (Paris)ABCB1
euGene (Indiana)5243
SOURCE (Stanford)NM_000927
Genomic and cartography
GoldenPath (UCSC)ABCB1  -  7q21.2   chr7:86970884-87180500 -  7q21.12   [Description]    (hg18-Mar_2006)
EnsemblABCB1 - 7q21.12 [CytoView]
Mapping of homologs : NCBIABCB1 [Mapview]
OMIM171050   612244   
Gene and transcription
Gene : Genbank (Entrez)AB208970 AF016535 AK290159 AK308467 AM393352
Reference sequence (RefSeq transcript) :SRSNM_000927
Reference transcript : EntrezNM_000927
RefSeq genomic : SRSAC_000050 AC_000068 AC_000139 NC_000007 NT_007933 NT_079595 NW_001839064 NW_923574
RefSeq genomic : EntrezAC_000050 AC_000068 AC_000139 NC_000007 NT_007933 NT_079595 NW_001839064 NW_923574
Consensus coding sequences : CCDS NCBIABCB1
Cluster EST : UnigeneHs.489033 [ SRS ] Hs.489033 [ NCBI ]
Alternative Splicing : Fast-db (Paris)7829
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP08183 (SRS) P08183 (Expasy) P08183 (Uniprot)
With graphics : InterProP08183
Splice isoforms : VarSplice FASTAP08183(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ABC_TM1F (PS50929)    ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domain pattern : Prosite (Expaxy)ABC_TM1F (PS50929)    ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (SRS)AAA+_ATPase_core    ABC_TM_1    ABC_TM_transpt    ABC_transporter-like   
Domains : Interpro (EBI)AAA+_ATPase_core    ABC_TM_1    ABC_TM_transpt    ABC_transporter-like   
Related proteins : CluSTrP08183
Domain families : Pfam SRSABC_membrane (PF00664)    ABC_tran (PF00005)   
Domain families : Pfam SangerABC_membrane (PF00664)    ABC_tran (PF00005)   
Domain families : Pfam NCBIpfam00664    pfam00005   
Domain families : Smart EMBLAAA (SM00382)
Domain structure : Prodom (Prabi Lyon)ABC_transporter (PD000006)   
Blocks (Seattle)P08183
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD01370
Protein Interaction databases
DIP (DOE-UCLA)P08183
IntAct (EBI)P08183
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIABCB1
SNP : GeneSNP UtahABCB1
SNP : HGBaseABCB1
Genetic variants : HAPMAPABCB1
Somatic Mutations in Cancer : COSMICABCB1 
Mutations and Diseases : HGMDABCB1
Hereditary diseases : OMIM171050    612244   
Hereditary diseases : GENETests171050    612244   
Diseases : Genetic AssociationABCB1
General knowledge
Homologs : HomoloGeneABCB1
Homology/Alignments : Family Browser UCSCABCB1
Phylogenetic Trees/Animal Genes : TreeFamABCB1
Catalytic activity : Enzyme3.6.3.44 [ Enzyme-Expasy ]   3.6.3.44 [ Enzyme-SRS ]   3.6.3.44 [ IntEnz-EBI ]   3.6.3.44 [ BRENDA ]   3.6.3.44 [ KEGG ]   
Chemical/Protein Interactions : CTD5243
Keywords Ontology : AmiGOnucleotide binding  transporter activity  protein binding  ATP binding  membrane fraction  transport  xenobiotic-transporting ATPase activity  cell surface  membrane  integral to membrane  hydrolase activity  ATPase activity  response to drug  
Keywords Ontology : EGO-EBInucleotide binding  transporter activity  protein binding  ATP binding  membrane fraction  transport  xenobiotic-transporting ATPase activity  cell surface  membrane  integral to membrane  hydrolase activity  ATPase activity  response to drug  
Pathways : BIOCARTAMulti-Drug Resistance Factors [Genes]    Nuclear Receptors in Lipid Metabolism and Toxicity [Genes]    Hypoxia and p53 in the Cardiovascular system [Genes]   
Pathways : KEGG
Other databases
Probes
Probes : ImagenesABCB1 Related clones (RZPD - Berlin)
Literature
PubMed499 Pubmed reference(s) in Entrez
PubGeneABCB1

Bibliography

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Sequential emergence of MRP- and MDR1-gene over-expression as well as MDR1-gene translocation in homoharringtonine-selected K562 human leukemia cell lines.
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Functional expression of MDR-1 in acute myeloid leukemia: correlation with the clinical-biological, immunophenotypical, and prognostic disease characteristics.
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MDR 1 expression is an independent prognostic factor for response and survival in de novo acute myeloid leukaemia.
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The prognostic significance of the expression and function of multidrug resistance transporter proteins in acute myeloid leukemia: studies of the Southwest Oncology Group Leukemia Research Program.
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PMID 9408958
 
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Contributor(s)

Written03-1998Franck Viguié

Citation

This paper should be referenced as such :
Viguié F . ABCB1. Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/PGY1ID105.html

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indexed on : Sat Jun 27 16:38:27 CEST 2009

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