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ZBTB16 (zinc finger and BTB domain containing 16)

Identity

Other namesPLZF (promyelocytic leukemia zinc finger)
ZNF145 (zinc finger protein 145)
HGNC (Hugo) ZBTB16
Location 11q23.1
Location_base_pair Starts at 113436498 and ends at 113626607 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order centromeric to MLL

DNA/RNA

 
  c-PLZF at 11q23.1 in normal cells: PAC 980J15 - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are wellcome: contact M Rocchi
Transcription 2.2 kb mRNA; alternative splicing: --> PLZFa and PLZFb

Protein

Description 540 and 673 amino acids, 62 and 74 kDa (PLZFa and b respectively); Kr¸ppel-like zinc finger protein; N-term BTB/POZ domain (protein-protein interaction motif) and 9 zinc finger domains in C-term
Expression highly specific for hematopoietic cells; during mouse development, PLZF is expressed in embryonic tissus, giving rise to hematopoietic progenitors; in man, PLZF is expressed in CD34+ progenitor cells and in primitive multipotent hematopoietic cell lines; PLZF levels decrease progressively with cell maturation and also with maturation induced by ATRA treatment.
Localisation nuclear; immunodetection shows a nuclear speckeled distribution of PLZF, resulting from a localization on discrete nuclear bodies whose formation is dependent on the integrity of the BTB/POZ domain.
Function putative transcription factor associated with myeloid differentiation; sequence specific DNA binding activity; in co-transfection experiments, PLZF has been shown to represses the transcription.
Homology with the zinc finger MZF-1

Implicated in

Entity t(11;17)(q23;q21) in M3 ANLL --> PLZF - RARA
Disease acute promyelocytic leukaemia with a 'variant' translocation
Prognosis worse prognosis than M3 ANLL with t(15;17), because the patients fail to respond to the maturation effect of ATRA
Cytogenetics t(11;17), like t(15;17)(q22;q21), and like another t(11;17)(q13;q21), with a discrete breakpoint in 11q13 are, closely related to t(15;17)(q22;q21)
Hybrid/Mutated Gene both fusion transcripts are expressed
Abnormal Protein the two fusion proteins are produced; the PLZF/RARa protein contains the N-terminal BTB/POZ domain and two out of the nine zinc finger domains from PLZF; tThe POZ domain is largely responsible for the activity of PLZF/RARa fusion protein.
  

External links

Nomenclature
HGNC (Hugo)ZBTB16   12930
Entrez_Gene (NCBI)ZBTB16  7704  zinc finger and BTB domain containing 16
Cards
AtlasPLZF37
GeneCards (Weizmann)ZBTB16
Ensembl (Hinxton)ENSG00000109906 [Gene_View]  ZBTB16 [Vega]
AceView (NCBI)ZBTB16
Genatlas (Paris)ZBTB16
euGene (Indiana)7704
SOURCE (Stanford)NM_001018011 NM_006006
Genomic and cartography
GoldenPath (UCSC)ZBTB16  -  11q23.1   chr11:113436498-113626607 +  11q23   [Description]    (hg18-Mar_2006)
EnsemblZBTB16 - 11q23 [CytoView]
Mapping of homologs : NCBIZBTB16 [Mapview]
OMIM176797   612447   
Gene and transcription
Gene : Genbank (Entrez)AB208916 AK126422 BC026902 BC029812 BM969145
Reference sequence (RefSeq transcript) :SRSNM_001018011 NM_006006
Reference transcript : EntrezNM_001018011 NM_006006
RefSeq genomic : SRSAC_000054 AC_000143 NC_000011 NT_033899 NW_001838042 NW_925173
RefSeq genomic : EntrezAC_000054 AC_000143 NC_000011 NT_033899 NW_001838042 NW_925173
Consensus coding sequences : CCDS NCBIZBTB16
Cluster EST : UnigeneHs.682144 [ SRS ] Hs.682144 [ NCBI ]
Alternative Splicing : Fast-db (Paris)13982
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ05516 (SRS) Q05516 (Expasy) Q05516 (Uniprot)
With graphics : InterProQ05516
Splice isoforms : VarSplice FASTAQ05516(VarSplice FASTA)
Domaine pattern : Prosite (SRS)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domain pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ05516
Domain families : Pfam SRSBTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam SangerBTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam NCBIpfam00651    pfam00096   
Domain families : Smart EMBLBTB (SM00225)ZnF_C2H2 (SM00355)
Domain structure : Prodom (Prabi Lyon)Znf_C2H2 (PD000003)   
Blocks (Seattle)Q05516
Crystal structure of protein : PDB SRS1BUO    1CS3   
Crystal structure of protein : PDBSum1BUO    1CS3   
Crystal structure of protein : IMB1BUO    1CS3   
Crystal structure of protein : PDB RSDB1BUO    1CS3   
HPRD11762
Protein Interaction databases
DIP (DOE-UCLA)Q05516
IntAct (EBI)Q05516
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIZBTB16
SNP : GeneSNP UtahZBTB16
SNP : HGBaseZBTB16
Genetic variants : HAPMAPZBTB16
Somatic Mutations in Cancer : COSMICZBTB16 
Translocation Breakpoints in Cancer : TICdbZBTB16 
Mutations and Diseases : HGMDZBTB16
Hereditary diseases : OMIM176797    612447   
Hereditary diseases : GENETests176797    612447   
Diseases : Genetic AssociationZBTB16
General knowledge
Homologs : HomoloGeneZBTB16
Homology/Alignments : Family Browser UCSCZBTB16
Phylogenetic Trees/Animal Genes : TreeFamZBTB16
Chemical/Protein Interactions : CTD7704
Keywords Ontology : AmiGOmesonephros development  DNA binding  intracellular  nucleus  nucleolus  transcription  apoptosis  central nervous system development  zinc ion binding  specific transcriptional repressor activity  PML body  nuclear speck  transcriptional repressor complex  modification-dependent protein catabolic process  protein homodimerization activity  negative regulation of myeloid cell differentiation  negative regulation of transcription, DNA-dependent  metal ion binding  
Keywords Ontology : EGO-EBImesonephros development  DNA binding  intracellular  nucleus  nucleolus  transcription  apoptosis  central nervous system development  zinc ion binding  specific transcriptional repressor activity  PML body  nuclear speck  transcriptional repressor complex  modification-dependent protein catabolic process  protein homodimerization activity  negative regulation of myeloid cell differentiation  negative regulation of transcription, DNA-dependent  metal ion binding  
Pathways : BIOCARTAMap Kinase Inactivation of SMRT Corepressor [Genes]   
Pathways : KEGG
Other databases
Probes
ProbePLZF at 11q23.1 in normal cells (Bari)
Probes : ImagenesZBTB16 Related clones (RZPD - Berlin)
Literature
PubMed77 Pubmed reference(s) in Entrez
PubGeneZBTB16

Bibliography

Rearrangements of the retinoic acid receptor alpha and promyelocytic leukemia zinc finger genes resulting from t(11;17)(q23;q21) in a patient with acute promyelocytic leukemia.
Chen SJ, Zelent A, Tong JH, Yu HQ, Wang ZY, Derrˆ© J, Berger R, Waxman S, Chen Z
The Journal of clinical investigation. 1993 ; 91 (5) : 2260-2267.
PMID 8387545
 
Reduced and altered DNA-binding and transcriptional properties of the PLZF-retinoic acid receptor-alpha chimera generated in t(11;17)-associated acute promyelocytic leukemia.
Licht JD, Shaknovich R, English MA, Melnick A, Li JY, Reddy JC, Dong S, Chen SJ, Zelent A, Waxman S
Oncogene. 1996 ; 12 (2) : 323-336.
PMID 8570209
 
PML, PLZF and NPM genes in the molecular pathogenesis of acute promyelocytic leukemia.
Pandolfi PP
Haematologica. 1996 ; 81 (5) : 472-482.
PMID 8952164
 
Leukemia-associated retinoic acid receptor alpha fusion partners, PML and PLZF, heterodimerize and colocalize to nuclear bodies.
Koken MH, Reid A, Quignon F, Chelbi-Alix MK, Davies JM, Kabarowski JH, Zhu J, Dong S, Chen S, Chen Z, Tan CC, Licht J, Waxman S, de Thˆ© H, Zelent A
Proceedings of the National Academy of Sciences of the United States of America. 1997 ; 94 (19) : 10255-10260.
PMID 9294197
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-1998Franck Viguié

Citation

This paper should be referenced as such :
Viguié F . ZBTB16 (zinc finger and BTB domain containing 16). Atlas Genet Cytogenet Oncol Haematol. April 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/PLZF37.html

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indexed on : Sat Jun 27 16:36:56 CEST 2009

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