Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZBTB16 (zinc finger and BTB domain containing 16)

Identity

Other namesPLZF (promyelocytic leukemia zinc finger)
ZNF145 (zinc finger protein 145)
HGNC ZBTB16
Location 11q23.1
Local_order centromeric to MLL

DNA/RNA

 
  c-PLZF at 11q23.1 in normal cells: PAC 980J15 - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are wellcome: contact M Rocchi
Transcription 2.2 kb mRNA; alternative splicing: --> PLZFa and PLZFb

Protein

Description 540 and 673 amino acids, 62 and 74 kDa (PLZFa and b respectively); Kr¸ppel-like zinc finger protein; N-term BTB/POZ domain (protein-protein interaction motif) and 9 zinc finger domains in C-term
Expression highly specific for hematopoietic cells; during mouse development, PLZF is expressed in embryonic tissus, giving rise to hematopoietic progenitors; in man, PLZF is expressed in CD34+ progenitor cells and in primitive multipotent hematopoietic cell lines; PLZF levels decrease progressively with cell maturation and also with maturation induced by ATRA treatment.
Localisation nuclear; immunodetection shows a nuclear speckeled distribution of PLZF, resulting from a localization on discrete nuclear bodies whose formation is dependent on the integrity of the BTB/POZ domain.
Function putative transcription factor associated with myeloid differentiation; sequence specific DNA binding activity; in co-transfection experiments, PLZF has been shown to represses the transcription.
Homology with the zinc finger MZF-1

Implicated in

Entity t(11;17)(q23;q21) in M3 ANLL --> PLZF - RARA
Disease acute promyelocytic leukaemia with a 'variant' translocation
Prognosis worse prognosis than M3 ANLL with t(15;17), because the patients fail to respond to the maturation effect of ATRA
Cytogenetics t(11;17), like t(15;17)(q22;q21), and like another t(11;17)(q13;q21), with a discrete breakpoint in 11q13 are, closely related to t(15;17)(q22;q21)
Hybrid/Mutated Gene both fusion transcripts are expressed
Abnormal Protein the two fusion proteins are produced; the PLZF/RARa protein contains the N-terminal BTB/POZ domain and two out of the nine zinc finger domains from PLZF; tThe POZ domain is largely responsible for the activity of PLZF/RARa fusion protein.
  

External links

Nomenclature
HGNCZBTB16   12930
Entrez_GeneZBTB16  7704  zinc finger and BTB domain containing 16
Cards
AtlasPLZF37
GeneCardsZBTB16
EnsemblZBTB16 [Search_View]   ENSG00000109906 [Gene_View]
GenatlasZBTB16
GeneLynxZBTB16
eGenomeZBTB16
euGene7704
Genomic and cartography
GoldenPathZBTB16  -  11q23.1   chr11:113436498-113626607 +  11q23   [Description]    (hg18-Mar_2006)
EnsemblZBTB16 - 11q23 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneZBTB16
Gene and transcription
GenbankAB208916 [ ENTREZ ]
GenbankAK126422 [ ENTREZ ]
GenbankBC026902 [ ENTREZ ]
GenbankBC029812 [ ENTREZ ]
GenbankBM969145 [ ENTREZ ]
RefSeqNM_001018011 [ SRS ]    NM_001018011 [ ENTREZ ]
RefSeqNM_006006 [ SRS ]    NM_006006 [ ENTREZ ]
RefSeqAC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeqAC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeqNC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeqNT_033899 [ SRS ]    NT_033899 [ ENTREZ ]
RefSeqNW_001838042 [ SRS ]    NW_001838042 [ ENTREZ ]
RefSeqNW_925173 [ SRS ]    NW_925173 [ ENTREZ ]
AceViewZBTB16 AceView - NCBI
UnigeneHs.682144 [ SRS ]    Hs.682144 [ NCBI ]     HS682144 [ spliceNest ]
Fast-db13982 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ05516 [ SRS]    Q05516 [ EXPASY ]     Q05516 [ INTERPRO ]     Q05516 [ UNIPROT ]
PrositePS50097 BTB [ SRS ]    PS50097 BTB [ Expasy ]
PrositePS00028 ZINC_FINGER_C2H2_1 [ SRS ]    PS00028 ZINC_FINGER_C2H2_1 [ Expasy ]
PrositePS50157 ZINC_FINGER_C2H2_2 [ SRS ]    PS50157 ZINC_FINGER_C2H2_2 [ Expasy ]
InterproIPR000210 BTB/POZ-like [ SRS ]    IPR000210 BTB/POZ-like [ EBI ]
InterproIPR011333 BTB/POZ_fold [ SRS ]    IPR011333 BTB/POZ_fold [ EBI ]
InterproIPR013069 BTB_POZ [ SRS ]    IPR013069 BTB_POZ [ EBI ]
InterproIPR007087 Znf_C2H2 [ SRS ]    IPR007087 Znf_C2H2 [ EBI ]
InterproIPR015880 Znf_C2H2-like [ SRS ]    IPR015880 Znf_C2H2-like [ EBI ]
InterproIPR013087 Znf_C2H2/integrase_DNA-bd [ SRS ]    IPR013087 Znf_C2H2/integrase_DNA-bd [ EBI ]
CluSTrQ05516
PfamPF00651 BTB [ SRS ]    PF00651 BTB [ Sanger ]    pfam00651 [ NCBI-CDD ]
PfamPF00096 zf-C2H2 [ SRS ]    PF00096 zf-C2H2 [ Sanger ]    pfam00096 [ NCBI-CDD ]
SmartSM00225 BTB [EMBL]
SmartSM00355 ZnF_C2H2 [EMBL]
ProdomPD000003 Znf_C2H2[INRA-Toulouse]
ProdomQ05516 ZBT16_HUMAN [ Domain structure ]   Q05516 ZBT16_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ05516
PDB1BUO [ SRS ]    1BUO [ PdbSum ],   1BUO [ IMB ]   1BUO [ RSDB ]
PDB1CS3 [ SRS ]    1CS3 [ PdbSum ],   1CS3 [ IMB ]   1CS3 [ RSDB ]
HPRD11762
Protein Interaction databases
DIPQ05516
IntActQ05516
Polymorphism : SNP, mutations, diseases
OMIM176797    [ map ]   
GENECLINICS176797
SNPZBTB16 [dbSNP-NCBI]  
SNPNM_001018011 [SNP-NCI]  
SNPNM_006006 [SNP-NCI]  
SNPZBTB16 [GeneSNPs - Utah]  ZBTB16] [HGBASE - SRS]
HAPMAPZBTB16 [HAPMAP]  
COSMICZBTB16 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbZBTB16 [Translocation breakpoints In Cancer]  
HGMDZBTB16
General knowledge
Family BrowserZBTB16 [UCSC Family Browser]
SOURCENM_001018011
SOURCENM_006006
SMDHs.682144
SAGEHs.682144
GOmesonephros development [Amigo]  mesonephros development
GODNA binding [Amigo]  DNA binding
GOintracellular [Amigo]  intracellular
GOnucleus [Amigo]  nucleus
GOtranscription [Amigo]  transcription
GOapoptosis [Amigo]  apoptosis
GOcentral nervous system development [Amigo]  central nervous system development
GOzinc ion binding [Amigo]  zinc ion binding
GOspecific transcriptional repressor activity [Amigo]  specific transcriptional repressor activity
GOPML body [Amigo]  PML body
GOnuclear speck [Amigo]  nuclear speck
GOtranscriptional repressor complex [Amigo]  transcriptional repressor complex
GOprotein homodimerization activity [Amigo]  protein homodimerization activity
GOnegative regulation of myeloid cell differentiation [Amigo]  negative regulation of myeloid cell differentiation
GOnegative regulation of transcription, DNA-dependent [Amigo]  negative regulation of transcription, DNA-dependent
GOmetal ion binding [Amigo]  metal ion binding
BIOCARTAMap Kinase Inactivation of SMRT Corepressor    [Genes]
PubGeneZBTB16
TreeFamZBTB16
CTD7704 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbePLZF at 11q23.1 in normal cells (Bari)
ProbeZBTB16 Related clones (RZPD - Berlin)
PubMed
PubMed69 Pubmed reference(s) in LocusLink

Bibliography

Rearrangements of the retinoic acid receptor alpha and promyelocytic leukemia zinc finger genes resulting from t(11;17)(q23;q21) in a patient with acute promyelocytic leukemia.
Chen SJ, Zelent A, Tong JH, Yu HQ, Wang ZY, Derrˆ© J, Berger R, Waxman S, Chen Z
The Journal of clinical investigation. 1993 ; 91 (5) : 2260-2267.
PMID 8387545
 
Reduced and altered DNA-binding and transcriptional properties of the PLZF-retinoic acid receptor-alpha chimera generated in t(11;17)-associated acute promyelocytic leukemia.
Licht JD, Shaknovich R, English MA, Melnick A, Li JY, Reddy JC, Dong S, Chen SJ, Zelent A, Waxman S
Oncogene. 1996 ; 12 (2) : 323-336.
PMID 8570209
 
PML, PLZF and NPM genes in the molecular pathogenesis of acute promyelocytic leukemia.
Pandolfi PP
Haematologica. 1996 ; 81 (5) : 472-482.
PMID 8952164
 
Leukemia-associated retinoic acid receptor alpha fusion partners, PML and PLZF, heterodimerize and colocalize to nuclear bodies.
Koken MH, Reid A, Quignon F, Chelbi-Alix MK, Davies JM, Kabarowski JH, Zhu J, Dong S, Chen S, Chen Z, Tan CC, Licht J, Waxman S, de Thˆ© H, Zelent A
Proceedings of the National Academy of Sciences of the United States of America. 1997 ; 94 (19) : 10255-10260.
PMID 9294197
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written04-1998Franck Viguié

Citation

This paper should be referenced as such :
Viguié F . ZBTB16 (zinc finger and BTB domain containing 16). Atlas Genet Cytogenet Oncol Haematol. April 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/PLZF37.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:16:28 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.