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PML (Promyelocytic leukemia)

Identity

Other namesMYL (myelocytic leukemia)
HGNC (Hugo) PML
Location 15q24
Location_base_pair Starts at 74287014 and ends at 74335716 bp from pter ( according to hg19-Feb_2009)  [Mapping]
 
  Probe(s) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics

DNA/RNA

Description 9 coding exons; total gene sequence: 35 kb ?
Transcription 3 main mRNAs 4.6, 3.0 and 2.1 kb; alternative splicing generates at least 16 isoforms of mRNAs, varying in the region coding for the C-terminal part of the protein

Protein

Description 560 amino acids, 70 KDa (longest isoform); composed successively, from the N- to the C-terminus, by: 1- a proline-rich N-terminus 2- a so-called "tripartite motif", cysteine-histidine rich, composed of a RING finger structure and 2 B box domains, with putative DNA-binding function 3- a coiled-coil motif corresponding to a dimerization interface 4- a basic sequence with a nuclear localization domain, and 5- a serine-proline rich C-terminal region, of unknown function, variable in length (alternative splicing) and containing phosphorylation sites
Expression in a wide variety of tissues. In hematopoietic tissue, expression apparently restricted to myeloid precursors
Localisation nuclear, as part of a multiproteic complex located into multiple subnuclear PML oncogenic domains (PODs)
Function unknown to date; putative transcription factor; in conjunction with other proteins included in the PODs, it would play a role as tumor suppressor and in apoptosis
Homology with (numerous) other RING finger / B box proteins

Implicated in

Entity t(15;17)(q22;q21) / acute promyelocytic leukemia (APL) -->PML- RARA
Disease typical APL (or M3 ANLL, FAB classification), approximately 98% of APL cases; abnormal promyelocytes with Auer rods and bundles (faggots); disruption of the PODs with a microspeckeled pattern; maturation response to all-trans retinoic acid (ATRA) therapy
Prognosis immediate prognosis impaired by intravascular disseminated coagulopathy; long term prognosis is favorable with treatment combining ATRA plus chemotherapy
Cytogenetics variant or complex t(15;17) translocation in 5% of cases, no known prognosis implication; secondary chromosomal abnormalities in 30 to 35% of APL at diagnosis; association with +8 in 17 to 28% of cases; other associations are rare but recurrent: del(7q), del(9q), ider(17)t(15;17), +21
Hybrid/Mutated Gene
  • the crucial fusion transcript is 5'PML-3'RARA, encoded by der(15) chromosome; the counterpart 5'RARA-3'PML encoded by der(17) is inconstant
  • breakpoint in RARA gene is always located in intron between A and B domains
  • three breakpoint clusters in PML gene: bcr1 (70% of patients), bcr2 (10%) and bcr3 (20%), giving rise respectively to the long (L), intermediate (V) and short (S) length hybrid PML-RARAtranscripts; V form would be linked to ATRA decreased sensitivity and S form to association with an excess of secondary chromosome changes.
  • Abnormal Protein 106 Kda fusion protein; role in the leukemogenic process by probable interference with the signalling pathway leading to differentiation and maturation of myeloid precursors (mainly dysregulation of retinoid-inducible genes involved in myeloid differentiation)
      

    Breakpoints

     

    External links

    Nomenclature
    HGNC (Hugo)PML   9113
    Entrez_Gene (NCBI)PML  5371  promyelocytic leukemia
    Cards
    AtlasPMLID41
    GeneCards (Weizmann)PML
    Ensembl (Hinxton)ENSG00000140464 [Gene_View]  PML [Vega]
    AceView (NCBI)PML
    Genatlas (Paris)PML
    euGene (Indiana)5371
    SOURCE (Stanford)NM_002675 NM_033238 NM_033239 NM_033240 NM_033244 NM_033246 NM_033247 NM_033249 NM_033250
    Gene Expression (Array Express) ENSG00000140464
    Genomic and cartography
    GoldenPath (UCSC)PML  -  15q24   chr15:74287014-74335716 +  15q22   [Description]    (hg19-Feb_2009)
    EnsemblPML - 15q22 [CytoView]
    Mapping of homologs : NCBIPML [Mapview]
    OMIM102578   
    Gene and transcription
    Gene : Genbank (Entrez)AB208950 AB209051 AB209411 AF230401 AF230402
    Reference sequence (RefSeq transcript) :SRSNM_002675 NM_033238 NM_033239 NM_033240 NM_033244 NM_033246 NM_033247 NM_033249 NM_033250
    Reference transcript : EntrezNM_002675 NM_033238 NM_033239 NM_033240 NM_033244 NM_033246 NM_033247 NM_033249 NM_033250
    RefSeq genomic : SRSAC_000058 AC_000147 NC_000015 NT_010194 NW_001838218 NW_925884 NW_927098
    RefSeq genomic : EntrezAC_000058 AC_000147 NC_000015 NT_010194 NW_001838218 NW_925884 NW_927098
    Consensus coding sequences : CCDS NCBIPML
    Cluster EST : UnigeneHs.526464 [ SRS ] Hs.526464 [ NCBI ]
    Alternative Splicing : Fast-db (Paris)18056
    Protein : pattern, domain, 3D structure
    Protein : UniProt/SwissProtP29590 (SRS) P29590 (Expasy) P29590 (Uniprot)
    With graphics : InterProP29590
    Splice isoforms : VarSplice FASTAP29590(VarSplice FASTA)
    Domaine pattern : Prosite (SRS)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
    Domain pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
    Domains : Interpro (SRS)DUF3583    Znf_B-box    Znf_RING    Znf_RING_CS   
    Domains : Interpro (EBI)DUF3583    Znf_B-box    Znf_RING    Znf_RING_CS   
    Related proteins : CluSTrP29590
    Domain families : Pfam SRSDUF3583 (PF12126)    zf-B_box (PF00643)   
    Domain families : Pfam SangerDUF3583 (PF12126)    zf-B_box (PF00643)   
    Domain families : Pfam NCBIpfam12126    pfam00643   
    Domain families : Smart EMBLBBOX (SM00336)  RING (SM00184)  
    Blocks (Seattle)P29590
    Crystal structure of protein : PDB SRS1BOR   
    Crystal structure of protein : PDBSum1BOR   
    Crystal structure of protein : IMB1BOR   
    Crystal structure of protein : PDB RSDB1BOR   
    Human Protein AtlasENSG00000140464
    HPRD00023
    Protein Interaction databases
    DIP (DOE-UCLA)P29590
    IntAct (EBI)P29590
    FunCoupENSG00000140464
    Polymorphism : SNP, mutations, diseases
    Single Nucleotide Polymorphism (SNP) : dbSNP NCBIPML
    SNP : GeneSNP UtahPML
    SNP : HGBasePML
    Genetic variants : HAPMAPPML
    Cancer Gene: CensusPML 
    Somatic Mutations in Cancer : COSMICPML 
    Translocation Breakpoints in Cancer : TICdbPML 
    Mutations and Diseases : HGMDPML
    Hereditary diseases : OMIM102578   
    Hereditary diseases : GENETests102578   
    Diseases : Genetic AssociationPML
    General knowledge
    Homologs : HomoloGenePML
    Homology/Alignments : Family Browser UCSCPML
    Phylogenetic Trees/Animal Genes : TreeFamPML
    Chemical/Protein Interactions : CTD5371
    Keywords Ontology : AmiGOresponse to hypoxia  DNA binding  protein binding  intracellular  insoluble fraction  nucleus  nucleoplasm  nucleolus  cytoplasm  protein complex assembly  induction of apoptosis  activation of caspase activity  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  cell cycle arrest  transforming growth factor beta receptor signaling pathway  common-partner SMAD protein phosphorylation  SMAD protein nuclear translocation  cell aging  zinc ion binding  negative regulation of cell proliferation  response to UV  response to gamma radiation  nuclear matrix  negative regulation of transcription  negative regulation of angiogenesis  PML body  PML body  PML body  myeloid cell differentiation  negative regulation of cell growth  transcription regulator activity  PML body organization  ubiquitin protein ligase binding  nuclear membrane  response to cytokine stimulus  DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis  protein homodimerization activity  interspecies interaction between organisms  regulation of MHC class I biosynthetic process  SMAD binding  metal ion binding  retinoic acid receptor signaling pathway  maintenance of protein location in nucleus  
    Keywords Ontology : EGO-EBIresponse to hypoxia  DNA binding  protein binding  intracellular  insoluble fraction  nucleus  nucleoplasm  nucleolus  cytoplasm  protein complex assembly  induction of apoptosis  activation of caspase activity  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  cell cycle arrest  transforming growth factor beta receptor signaling pathway  common-partner SMAD protein phosphorylation  SMAD protein nuclear translocation  cell aging  zinc ion binding  negative regulation of cell proliferation  response to UV  response to gamma radiation  nuclear matrix  negative regulation of transcription  negative regulation of angiogenesis  PML body  PML body  PML body  myeloid cell differentiation  negative regulation of cell growth  transcription regulator activity  PML body organization  ubiquitin protein ligase binding  nuclear membrane  response to cytokine stimulus  DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis  protein homodimerization activity  interspecies interaction between organisms  regulation of MHC class I biosynthetic process  SMAD binding  metal ion binding  retinoic acid receptor signaling pathway  maintenance of protein location in nucleus  
    Pathways : BIOCARTARegulation of transcriptional activity by PML [Genes]   
    Pathways : KEGG
    Other databases
    Other databasePML at 15q22 in normal cells (Bari)
    Probes
    Probes : ImagenesPML Related clones (RZPD - Berlin)
    Literature
    PubMed230 Pubmed reference(s) in Entrez
    PubGenePML

    Bibliography

    The t(15;17) translocation of acute promyelocytic leukaemia fuses the retinoic acid receptor alpha gene to a novel transcribed locus.
    de Thˆ© H, Chomienne C, Lanotte M, Degos L, Dejean A
    Nature. 1990 ; 347 (6293) : 558-561.
    PMID 2170850
     
    Chromosomal translocation t(15;17) in human acute promyelocytic leukemia fuses RAR alpha with a novel putative transcription factor, PML.
    Kakizuka A, Miller WH Jr, Umesono K, Warrell RP Jr, Frankel SR, Murty VV, Dmitrovsky E, Evans RM
    Cell. 1991 ; 66 (4) : 663-674.
    PMID 1652368
     
    Characterization of the PML-RAR alpha chimeric product of the acute promyelocytic leukemia-specific t(15;17) translocation.
    Nervi C, Poindexter EC, Grignani F, Pandolfi PP, Lo Coco F, Avvisati G, Pelicci PG, Jetten AM
    Cancer research. 1992 ; 52 (13) : 3687-3692.
    PMID 1319828
     
    Retinoic acid regulatory pathways, chromosomal translocations, and acute promyelocytic leukemia.
    Chen Z, Tong JH, Dong S, Zhu J, Wang ZY, Chen SJ
    Genes, chromosomes & cancer. 1996 ; 15 (3) : 147-156.
    PMID 8721678
     
    Genetics of APL and the molecular basis of retinoic acid treatment.
    Casini T, Grignani F, Pelicci PG
    International journal of cancer. Journal international du cancer. 1997 ; 70 (4) : 473-474.
    PMID 9033658
     
    Structure, organization, and dynamics of promyelocytic leukemia protein nuclear bodies.
    Hodges M, Tissot C, Howe K, Grimwade D, Freemont PS
    American journal of human genetics. 1998 ; 63 (2) : 297-304.
    PMID 9683622
     
    The pathogenesis of acute promyelocytic leukaemia: evaluation of the role of molecular diagnosis and monitoring in the management of the disease.
    Grimwade D
    British journal of haematology. 1999 ; 106 (3) : 591-613.
    PMID 10468848
     
    Deconstructing a disease: RARalpha, its fusion partners, and their roles in the pathogenesis of acute promyelocytic leukemia.
    Melnick A, Licht JD
    Blood. 1999 ; 93 (10) : 3167-3215.
    PMID 10233871
     
    The transcriptional role of PML and the nuclear body.
    Zhong S, Salomoni P, Pandolfi PP
    Nature cell biology. 2000 ; 2 (5) : E85-E90.
    PMID 10806494
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written10-2000Franck Viguié

    Citation

    This paper should be referenced as such :
    Viguié F . PML (Promyelocytic leukemia). Atlas Genet Cytogenet Oncol Haematol. October 2000 .
    URL : http://AtlasGeneticsOncology.org/Genes/PMLID41.html

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Thu Jul 15 14:51:40 CEST 2010

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