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PMS1 (PMS1 postmeiotic segregation increased 1 (S. cerevisiae))

Identity

Other namesHNPCC3
PMSL1
HGNC (Hugo) PMS1
Location 2q31-33
Location_base_pair Starts at 190357056 and ends at 190450600 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

 
  Diagram of the PMS1 gene. Exons are represented by boxes (in scale) transcribed and untranscribed sequences in blue and yellow, with exon numbers on top and number of base pairs at the bottom. Introns are represented by black bars (not in scale) and the number of base pairs indicated. The arrows show the ATG and the stop codons respectively.
Description The PMS1 gene is composed of 13 exons spanning in a region of 93056 bp.
Transcription The transcribed mRNA has 3032 bp

Protein

Description Amino acids: 932. Molecular Weight: 105830 Daltons. PMS1 is a protein involved in the mismatch repair process after DNA replication.
Function PMS1 binds to MLH1 to form a heterodimer, although MLH1 can also bind to PMS2 or MLH3. Although MLH1/PMS2 binds to the heteroduplexes MutSa (composed of MSH2 and MSH6) or MutSß (composed of MSH2 and MSH3), which recognize DNA lesions, it remains to be demonstrated the involvement of the MLH1/PMS1 heterodimer in the mismatch repair process, despite that the heterodimer MLH1/PMS2 is responsible for the recruitment of the proteins needed for the excision and repair synthesis.
Homology PMS1 is homologue to the bacterial MutL gene and to the Mlh2 gene in yeasts.

Mutations

Germinal A truncating germline mutation of PMS1 was found in one HNPCC patient. Nevertheless, a MSH2 mutation was found in this family, which was the only one that co-segregated with colon cancer. In addition, no more HNPCC patients have been found with mutations in this gene, and PMS1 -/- mice show no discernible phenotype. So there is no evidence that PMS1 mutations predispose to HNPCC.

External links

Nomenclature
HGNC (Hugo)PMS1   9121
Entrez_Gene (NCBI)PMS1  5378  PMS1 postmeiotic segregation increased 1 (S. cerevisiae)
Cards
AtlasPMS1ID345ch2q31
GeneCards (Weizmann)PMS1
Ensembl (Hinxton)ENSG00000064933 [Gene_View]  PMS1 [Vega]
AceView (NCBI)PMS1
Genatlas (Paris)PMS1
euGene (Indiana)5378
SOURCE (Stanford)NM_000534 NM_001128143 NM_001128144
Genomic and cartography
GoldenPath (UCSC)PMS1  -     chr2:190357056-190450600 +  2q31-q33|2q31.1   [Description]    (hg18-Mar_2006)
EnsemblPMS1 - 2q31-q33|2q31.1 [CytoView]
Mapping of homologs : NCBIPMS1 [Mapview]
OMIM600258   
Gene and transcription
Gene : Genbank (Entrez)AB102869 AB102870 AB102871 AB102872 AB102873
Reference sequence (RefSeq transcript) :SRSNM_000534 NM_001128143 NM_001128144
Reference transcript : EntrezNM_000534 NM_001128143 NM_001128144
RefSeq genomic : SRSAC_000045 AC_000134 NC_000002 NG_008648 NT_005403 NW_001838863 NW_921585
RefSeq genomic : EntrezAC_000045 AC_000134 NC_000002 NG_008648 NT_005403 NW_001838863 NW_921585
Consensus coding sequences : CCDS NCBIPMS1
Cluster EST : UnigeneHs.111749 [ SRS ] Hs.111749 [ NCBI ]
Alternative Splicing : Fast-db (Paris)13779
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP54277 (SRS) P54277 (Expasy) P54277 (Uniprot)
With graphics : InterProP54277
Splice isoforms : VarSplice FASTAP54277(VarSplice FASTA)
Domaine pattern : Prosite (SRS)DNA_MISMATCH_REPAIR_1 (PS00058)    HMG_BOX_2 (PS50118)   
Domain pattern : Prosite (Expaxy)DNA_MISMATCH_REPAIR_1 (PS00058)    HMG_BOX_2 (PS50118)   
Domains : Interpro (SRS)ATP_bd_ATPase    DNA_mismatch_repair    DNA_mismatch_repair_C    DNA_mismatch_repair_CS    DNA_mismatch_repair_N    HMG_1/2_box   
Domains : Interpro (EBI)ATP_bd_ATPase    DNA_mismatch_repair    DNA_mismatch_repair_C    DNA_mismatch_repair_CS    DNA_mismatch_repair_N    HMG_1/2_box   
Related proteins : CluSTrP54277
Domain families : Pfam SRSDNA_mis_repair (PF01119)    HATPase_c (PF02518)    HMG_box (PF00505)   
Domain families : Pfam SangerDNA_mis_repair (PF01119)    HATPase_c (PF02518)    HMG_box (PF00505)   
Domain families : Pfam NCBIpfam01119    pfam02518    pfam00505   
Domain families : Smart EMBLHATPase_c (SM00387)HMG (SM00398)
Blocks (Seattle)P54277
Crystal structure of protein : PDB SRS2CS1   
Crystal structure of protein : PDBSum2CS1   
Crystal structure of protein : IMB2CS1   
Crystal structure of protein : PDB RSDB2CS1   
HPRD02597
Protein Interaction databases
DIP (DOE-UCLA)P54277
IntAct (EBI)P54277
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIPMS1
SNP : GeneSNP UtahPMS1
SNP : HGBasePMS1
Genetic variants : HAPMAPPMS1
Somatic Mutations in Cancer : COSMICPMS1 
Mutations and Diseases : HGMDPMS1
Hereditary diseases : OMIM600258   
Hereditary diseases : GENETests600258   
Diseases : Genetic AssociationPMS1
General knowledge
Homologs : HomoloGenePMS1
Homology/Alignments : Family Browser UCSCPMS1
Phylogenetic Trees/Animal Genes : TreeFamPMS1
Chemical/Protein Interactions : CTD5378
Keywords Ontology : AmiGODNA binding  ATP binding  nucleus  mismatch repair  response to DNA damage stimulus  mismatched DNA binding  negative regulation of cell cycle  
Keywords Ontology : EGO-EBIDNA binding  ATP binding  nucleus  mismatch repair  response to DNA damage stimulus  mismatched DNA binding  negative regulation of cell cycle  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesPMS1 Related clones (RZPD - Berlin)
Literature
PubMed28 Pubmed reference(s) in Entrez
PubGenePMS1

Bibliography

Mutations of two PMS homologues in hereditary nonpolyposis colon cancer.
Nicolaides NC, Papadopoulos N, Liu B, Wei YF, Carter KC, Ruben SM, Rosen CA, Haseltine WA, Fleischmann RD, Fraser CM
Nature. 1994 ; 371 (6492) : 75-80.
PMID 8072530
 
Tumour susceptibility and spontaneous mutation in mice deficient in Mlh1, Pms1 and Pms2 DNA mismatch repair.
Prolla TA, Baker SM, Harris AC, Tsao JL, Yao X, Bronner CE, Zheng B, Gordon M, Reneker J, Arnheim N, Shibata D, Bradley A, Liskay RM
Nature genetics. 1998 ; 18 (3) : 276-279.
PMID 9500552
 
Isolation and characterization of the 5' region of the human mismatch repair gene hPMS1.
Yanagisawa Y, Ito E, Iwahashi Y, Akiyama Y, Yuasa Y, Maruyama K
Biochemical and biophysical research communications. 1998 ; 243 (3) : 738-743.
PMID 9500994
 
Identification of hMutLbeta, a heterodimer of hMLH1 and hPMS1.
Rˆ§schle M, Marra G, Nystrˆm-Lahti M, Schˆ§r P, Jiricny J
The Journal of biological chemistry. 1999 ; 274 (45) : 32368-32375.
PMID 10542278
 
The interacting domains of three MutL heterodimers in man: hMLH1 interacts with 36 homologous amino acid residues within hMLH3, hPMS1 and hPMS2.
Kondo E, Horii A, Fukushige S
Nucleic acids research. 2001 ; 29 (8) : 1695-1702.
PMID 11292842
 
The role of hPMS1 and hPMS2 in predisposing to colorectal cancer.
Liu T, Yan H, Kuismanen S, Percesepe A, Bisgaard ML, Pedroni M, Benatti P, Kinzler KW, Vogelstein B, Ponz de Leon M, Peltomˆ§ki P, Lindblom A
Cancer research. 2001 ; 61 (21) : 7798-7802.
PMID 11691795
 
DNA mismatch repair defects: role in colorectal carcinogenesis.
Jacob S, Praz F
Biochimie. 2002 ; 84 (1) : 27-47.
PMID 11900875
 
Lynch syndrome genes.
Peltomˆ§ki P
Familial cancer. 2005 ; 4 (3) : 227-232.
PMID 16136382
 
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Contributor(s)

Written12-2005Enric Domingo, Simo Schwartz Jr

Citation

This paper should be referenced as such :
Domingo E, Schwartz S Jr . PMS1 (PMS1 postmeiotic segregation increased 1 (S. cerevisiae)). Atlas Genet Cytogenet Oncol Haematol. December 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/PMS1ID345ch2q31.html

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indexed on : Sat Jun 27 16:42:22 CEST 2009

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