Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PRKAR1A (protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1))

Identity

Other namesR1A
CAR
CNC1
MGC17251
PKR1
PRKAR1
TSE1
Hugo PRKAR1A
Location 17q23-24

DNA/RNA

 
Description The RI alpha gene is composed of 10 coding exons of varying lengths, separated by introns, giving the gene a total length of at least 21 kb.
Transcription By alternative splicing, the PRKAR1A gene encodes 3 types of transcripts that all translate in the same protein.

Protein

Description 48 kDa ; contains two tandem cAMP-binding domains at the C-terminus and the dimerization domain at the N-terminus that serves also as a docking site for A Kinase Anchoring Proteins (AKAPs).
Expression Ubiquitously expressed, in particular in brain, endocrine tissues, adipose tissue and bone.
Localisation Predominantly cytoplasmic; nuclear traslocation possible.
Function Two regulatory subunits bind to two catalytic subunits forming an heterotetramer, the inactive holoenzyme protein kinase A (PKA) or cyclic AMP-dependent protein kinase. PKA activation occurs when 2 cAMP molecules bind to each regulatory subunit, eliciting a reversible conformational change that releases the now active catalytic subunits. Four different regulatory subunits and three catalytic subunits of PKA have been identified in humans. The protein encoded by PRKAR1A is just one of the four possible regulatory subunits of the PKA tetramer; however, PRKAR1A is the most abundant and widely expressed PKA subunit. Although its other functions are not fully elucidated yet, PRKAR1A may act as a tumor-suppressor gene in Carney complex (CNC) and in sporadic (non-CNC-related) adrenal and thyroid tumors.
Homology Prkar1a, Mus musculus
Gene conserved in Mammalia: M.musculus-81.36%; R.norvegicus-97.38%; C.elegans-57.91%; D.melanogaster-72.07%; S. cerevisiae-37.41%

Mutations

Germinal Most mutations are null alleles; they are dispersed throughout the coding region of the gene.
Somatic Many of tumors that develop in patients with Carney complex and PPNAD (see below) show loss of heterozygosity; somatic mutations in the PRKARIA gene have been reported in three cases of sporadic adrenocortical tumors.

Implicated in

Entity Carney complex syndrome, type I
Disease A multiple neoplasia syndrome characterized by spotty skin pigmentation, cardiac and other myxomas, endocrine tumors, psammomatous melanotic schwannomas and some other tumors.
Prognosis According to the severity of the disease in a given patient, and to the quality of a regular follow up; life span is decreased in patients with CNC. 57% of the deaths are due to heart related causes; others due to the postoperative complications or evolution of the malignant process; presymptomatic diagnosis improves survival data and might prevent earlier the main causes of death in this disease.
Cytogenetics Limited data; some of myxomas and PPNAD from CNC patients showed telomeric associations, dicentric chromosomes, aneuploidy, polyploidy and chromosomal rearrangements.
Hybrid/Mutated Gene Half of CNC patients show PRKARIA mutations.
Oncogenesis PRKARIA is frequently affected by bi-allelic inactivation in tumors of CNC patients. However 1 kindred was described where a splice site mutation led to exon 6 skipping and an expressed shorter PRKAR1A protein. The mutant protein was present in patients' leukocytes and tumors, and in vitro studies indicated that the mutant PRKAR1A activated cAMP-dependent PKA signaling at the nuclear level. Along with the lack of allelic loss at the PRKAR1A locus in most of the tumors from this kindred, these data suggested that alteration of PRKAR1A function, not only its complete loss, is sufficient for augmenting PKA activity leading to tumorigenesis in tissues in patients with CNC.
  
Entity PPNAD - Primary pigmented nodular adrenocortical disease Primary pigmented nodular adrenocortical disease
Disease PPNAD is a cause of ACTH-independent Cushing's syndrome. This condition can be difficult to diagnose because hypercortisolism may be periodic and adrenal imaging may not demonstrate an adrenal tumor.
Hybrid/Mutated Gene Inactivating PRKAR1A germline mutations are frequent in sporadic and isolated cases of PPNAD.
Oncogenesis Both alleles are frequently inactivated. The wild-type allele can be inactivated by somatic mutations, consistent with the hypothesis of the gene being a tumor suppressor gene.
  
Entity Adrenocortical tumors, sporadic
Disease Patients frequently present with ACTH-independent Cushing's syndrome.
Hybrid/Mutated Gene Somatic mutations in the PRKAR1A gene were identified in 3 cases of sporadic adrenocortical tumor. All 3 mutations predicted premature termination of the protein. 17q23-24 loss-of-heterozygosity is a frequent event in adrenal carcinomas.
Oncogenesis Haploinsufficiency of PRKARIA and a reversal of the ratio of R1A to R2B have been proposed to cause tumorigenesis, at least in some cases.
  
Entity Myxoma, intracardiac
Disease Benign neoplasms that occur in 7 per 10,000 individuals. These slowely proliferating lesions arise from subendocardial pluripotent primitive mesenchymal cells, which can differentiate within myxomas along a variety of lineages including epithelial, hematopoietic, and muscular.
Prognosis Life span is decreased in patients with myxomas. Morbidity and mortality are the result of embolic stroke, heart failure due to intracardiac obstruction, and rheumatologic symptoms attributed to myxoma-mediated production of IL-6.
Cytogenetics Limited data; 15 cases of myxomas contained clonal numerical and structural abnormalities including telomeric associations.
Hybrid/Mutated Gene Mutations of PRKARIA detected in the coding region of the gene, exons 5, 7 and 8.
Oncogenesis No somatic mutations were detected in cardiac myxomas; haploinsufficiency of PRKARIA and a reversal of the ratio of RIA to R2B have been proposed may contribute in tumorigenesis.
  
Entity Papillary thyroid carcinoma
Cytogenetics Reciprocal translocation between chromosomes 10 and 17
Hybrid/Mutated Gene RET/PTC2 is formed by the fusion of the RET tyrosine kinase domain with part of the RI-alpha regulatory subunit
Abnormal Protein RET/PTC2
Oncogenesis The fusion of the RET tyrosine kinase domain with a portion of the RIA gene leads to the expression of RET in the thyroid cells, where it is normally transcriptionally silent.
  

External links

Nomenclature
HugoPRKAR1A
GDBPRKAR1A
Entrez_GenePRKAR1A  5573  protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)
Cards
AtlasPRKAR1AID387
GeneCardsPRKAR1A
EnsemblPRKAR1A [Search_View]   ENSG00000108946 [Gene_View]
GenatlasPRKAR1A
GeneLynxPRKAR1A
eGenomePRKAR1A
euGene5573
Genomic and cartography
GoldenPathPRKAR1A  -     chr17:64019705-64040503 +  17q23-q24   [Description]    (hg18-Mar_2006)
EnsemblPRKAR1A - 17q23-q24 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGenePRKAR1A
Gene and transcription
GenbankA12295 [ ENTREZ ]
GenbankAA015682 [ ENTREZ ]
GenbankAI074326 [ ENTREZ ]
GenbankAK097580 [ ENTREZ ]
GenbankAK124586 [ ENTREZ ]
RefSeqNM_002734 [ SRS ]    NM_002734 [ ENTREZ ]
RefSeqNM_212471 [ SRS ]    NM_212471 [ ENTREZ ]
RefSeqNM_212472 [ SRS ]    NM_212472 [ ENTREZ ]
RefSeqAC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeqNC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeqNG_007093 [ SRS ]    NG_007093 [ ENTREZ ]
RefSeqNT_010641 [ SRS ]    NT_010641 [ ENTREZ ]
RefSeqNW_926918 [ SRS ]    NW_926918 [ ENTREZ ]
AceViewPRKAR1A AceView - NCBI
UnigeneHs.659124 [ SRS ]    Hs.659124 [ NCBI ]     HS659124 [ spliceNest ]
Fast-db14297 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP10644 [ SRS]    P10644 [ EXPASY ]     P10644 [ INTERPRO ]
PrositePS00888 CNMP_BINDING_1 [ SRS ]    PS00888 CNMP_BINDING_1 [ Expasy ]
PrositePS00889 CNMP_BINDING_2 [ SRS ]    PS00889 CNMP_BINDING_2 [ Expasy ]
PrositePS50042 CNMP_BINDING_3 [ SRS ]    PS50042 CNMP_BINDING_3 [ Expasy ]
InterproIPR003117 cAMP-dep_prot_kin_reg_I/II_a/b [ SRS ]    IPR003117 cAMP-dep_prot_kin_reg_I/II_a/b [ EBI ]
InterproIPR002373 cAMP/cGMP_kin [ SRS ]    IPR002373 cAMP/cGMP_kin [ EBI ]
InterproIPR000595 cNMP_bd [ SRS ]    IPR000595 cNMP_bd [ EBI ]
InterproIPR012198 PK_regulatory [ SRS ]    IPR012198 PK_regulatory [ EBI ]
InterproIPR014710 RmlC-like_jellyroll [ SRS ]    IPR014710 RmlC-like_jellyroll [ EBI ]
CluSTrP10644
PfamPF00027 cNMP_binding [ SRS ]    PF00027 cNMP_binding [ Sanger ]    pfam00027 [ NCBI-CDD ]
PfamPF02197 RIIa [ SRS ]    PF02197 RIIa [ Sanger ]    pfam02197 [ NCBI-CDD ]
SmartSM00100 cNMP [EMBL]
SmartSM00394 RIIa [EMBL]
BlocksP10644
HPRD01786
Protein Interaction databases
DIPP10644
IntActP10644
Polymorphism : SNP, mutations, diseases
OMIM160980;188550;188830;255960;610489    [ map ]   
GENECLINICS160980;188550;188830;255960;610489
SNPPRKAR1A [dbSNP-NCBI]  
SNPNM_002734 [SNP-NCI]  
SNPNM_212471 [SNP-NCI]  
SNPNM_212472 [SNP-NCI]  
SNPPRKAR1A [GeneSNPs - Utah]  PRKAR1A] [HGBASE - SRS]
HAPMAPPRKAR1A [HAPMAP]  
COSMICPRKAR1A [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDPRKAR1A
General knowledge
Family BrowserPRKAR1A [UCSC Family Browser]
SOURCENM_002734
SOURCENM_212471
SOURCENM_212472
SMDHs.659124
SAGEHs.659124
GOnucleotide binding [Amigo]  nucleotide binding
GOprotein binding [Amigo]  protein binding
GOcAMP-dependent protein kinase complex [Amigo]  cAMP-dependent protein kinase complex
GOregulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GOprotein amino acid phosphorylation [Amigo]  protein amino acid phosphorylation
GOsignal transduction [Amigo]  signal transduction
GOintracellular signaling cascade [Amigo]  intracellular signaling cascade
GOcAMP-dependent protein kinase regulator activity [Amigo]  cAMP-dependent protein kinase regulator activity
GOcAMP-dependent protein kinase regulator activity [Amigo]  cAMP-dependent protein kinase regulator activity
GOkinase activity [Amigo]  kinase activity
GOcAMP binding [Amigo]  cAMP binding
BIOCARTAActivation of cAMP-dependent protein kinase, PKA    [Genes]
KEGGApoptosis
KEGGInsulin signaling pathway
PubGenePRKAR1A
TreeFamPRKAR1A
CTD5573 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbePRKAR1A Related clones (RZPD - Berlin)
PubMed
PubMed86 Pubmed reference(s) in LocusLink

Bibliography

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Identification of a novel genetic locus for familial cardiac myxomas and Carney complex.
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Genetic heterogeneity and spectrum of mutations of the PRKAR1A gene in patients with the carney complex.
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PMID 11115848
 
Mutations of the gene encoding the protein kinase A type I-alpha regulatory subunit in patients with the Carney complex.
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PMID 12021165
 
Molecular analysis of the cyclic AMP-dependent protein kinase A (PKA) regulatory subunit 1A (PRKAR1A) gene in patients with Carney complex and primary pigmented nodular adrenocortical disease (PPNAD) reveals novel mutations and clues for pathophysiology: augmented PKA signaling is associated with adrenal tumorigenesis in PPNAD.
Groussin L, Kirschner LS, Vincent-Dejean C, Perlemoine K, Jullian E, Delemer B, Zacharieva S, Pignatelli D, Carney JA, Luton JP, Bertagna X, Stratakis CA, Bertherat J
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PMID 12424709
 
High prevalence of RET proto-oncogene activation (RET/PTC) in papillary thyroid carcinomas.
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PMID 12362031
 
Regulatory subunit type I-alpha of protein kinase A (PRKAR1A): a tumor-suppressor gene for sporadic thyroid cancer.
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PMID 12203783
 
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PMID 12095936
 
Molecular and functional analysis of PRKAR1A and its locus (17q22-24) in sporadic adrenocortical tumors: 17q losses, somatic mutations, and protein kinase A expression and activity.
Bertherat J, Groussin L, Sandrini F, Matyakhina L, Bei T, Stergiopoulos S, Papageorgiou T, Bourdeau I, Kirschner LS, Vincent-Dejean C, Perlemoine K, Gicquel C, Bertagna X, Stratakis CA
Cancer research. 2003 ; 63 (17) : 5308-5319.
PMID 14500362
 
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Contributor(s)

Written10-2004Constantine A Stratakis, Ludmila Matyakhina

Citation

This paper should be referenced as such :
Stratakis CA, Matyakhina L . PRKAR1A (protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)). Atlas Genet Cytogenet Oncol Haematol. October 2004 .
URL : http://AtlasGeneticsOncology.org/Genes/PRKAR1AID387.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:26:14 2008


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