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RAP1A

Identity

Hugo RAP1A
Location 1p13.3

DNA/RNA

 
Description 6 coding exons covering 18095 bp on chromosome 1

Protein

Description Rap1 is a member of the Ras superfamily of monomeric GTPases, closely related to Ras. There are two isoforms, Rap1A and Rap1B that share 95% identity and are encoded by two different genes. Rap1 proteins share 50% identity with Ras proteins, including the regions involved in GDP/GTP binding (hence Rap1A has very similar biochemical properties to Ras), C-terminal CAAX domain leading to prenylation (geranylgeranylation in the case of Rap1A), and effector region identical to that of Ras proteins causing Ras and Rap1 to share some potential effectors
Expression ubiquitous ; higher in brain and hemopo•etic tissues
Localisation Rap1 is bound to membranes. In many cell types, it is found in a perinuclear compartment overlapping the Golgi. Rap1 proteins (A and B) are phosphorylated near the C-ter by cAMP-dependent protein kinase. This results in translocation of part of the Rap1 pool to the cytosol.
Function The function of Rap1 is still a matter of debate. Its overexpression is able to compete with the activation of Raf-1 by active Ras. Active Rap1B has been shown to activate the B-Raf kinase and the MEK-ERK cascade. In several cellular models, Rap1 has been shown to be involved in the regulation of integrin-mediated cell adhesion.
Homology 95% to Rap1B, 60% identical to Rap2, 50 % to Ras proteins

Mutations

Germinal unknown

Implicated in

Entity no implication in pathologies characterized so far
  

External links

Nomenclature
HugoRAP1A
GDBRAP1A
Entrez_GeneRAP1A  5906  RAP1A, member of RAS oncogene family
Cards
AtlasRAP1AID272
GeneCardsRAP1A
EnsemblRAP1A [Search_View]   ENSG00000116473 [Gene_View]
GenatlasRAP1A
GeneLynxRAP1A
eGenomeRAP1A
euGene5906
Genomic and cartography
GoldenPathRAP1A  -  1p13.3   chr1:111963928-112057623 +  1p13.3   [Description]    (hg18-Mar_2006)
EnsemblRAP1A - 1p13.3 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneRAP1A
Gene and transcription
GenbankAB051846 [ ENTREZ ]
GenbankAF493912 [ ENTREZ ]
GenbankAK293044 [ ENTREZ ]
GenbankBC014086 [ ENTREZ ]
GenbankBI460853 [ ENTREZ ]
RefSeqNM_001010935 [ SRS ]    NM_001010935 [ ENTREZ ]
RefSeqNM_002884 [ SRS ]    NM_002884 [ ENTREZ ]
RefSeqAC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeqNC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeqNT_019273 [ SRS ]    NT_019273 [ ENTREZ ]
RefSeqNW_922462 [ SRS ]    NW_922462 [ ENTREZ ]
AceViewRAP1A AceView - NCBI
UnigeneHs.190334 [ SRS ]    Hs.190334 [ NCBI ]     HS190334 [ spliceNest ]
Fast-db17056 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP62834 [ SRS]    P62834 [ EXPASY ]     P62834 [ INTERPRO ]
InterproIPR003577 GTPase_Ras [ SRS ]    IPR003577 GTPase_Ras [ EBI ]
InterproIPR013753 Ras [ SRS ]    IPR013753 Ras [ EBI ]
InterproIPR001806 Ras_trnsfrmng [ SRS ]    IPR001806 Ras_trnsfrmng [ EBI ]
InterproIPR005225 Small_GTP_bd [ SRS ]    IPR005225 Small_GTP_bd [ EBI ]
CluSTrP62834
PfamPF00071 Ras [ SRS ]    PF00071 Ras [ Sanger ]    pfam00071 [ NCBI-CDD ]
SmartSM00173 RAS [EMBL]
BlocksP62834
PDB1C1Y [ SRS ]    1C1Y [ PdbSum ],   1C1Y [ IMB ]   1C1Y [ RSDB ]
PDB1GUA [ SRS ]    1GUA [ PdbSum ],   1GUA [ IMB ]   1GUA [ RSDB ]
HPRD01545
Protein Interaction databases
DIPP62834
IntActP62834
Polymorphism : SNP, mutations, diseases
OMIM179520    [ map ]   
GENECLINICS179520
SNPRAP1A [dbSNP-NCBI]  
SNPNM_001010935 [SNP-NCI]  
SNPNM_002884 [SNP-NCI]  
SNPRAP1A [GeneSNPs - Utah]  RAP1A] [HGBASE - SRS]
HAPMAPRAP1A [HAPMAP]  
COSMICRAP1A [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDRAP1A
General knowledge
Family BrowserRAP1A [UCSC Family Browser]
SOURCENM_001010935
SOURCENM_002884
SMDHs.190334
SAGEHs.190334
GOnucleotide binding [Amigo]  nucleotide binding
GOGTPase activity [Amigo]  GTPase activity
GOprotein binding [Amigo]  protein binding
GOGTP binding [Amigo]  GTP binding
GOintracellular [Amigo]  intracellular
GOplasma membrane [Amigo]  plasma membrane
GOcell cycle [Amigo]  cell cycle
GOsignal transduction [Amigo]  signal transduction
GOsmall GTPase mediated signal transduction [Amigo]  small GTPase mediated signal transduction
GOnegative regulation of cell cycle [Amigo]  negative regulation of cell cycle
BIOCARTAIntegrin Signaling Pathway    [Genes]
BIOCARTASignaling of Hepatocyte Growth Factor Receptor    [Genes]
KEGGMAPK signaling pathway
KEGGFocal adhesion
KEGGLeukocyte transendothelial migration
KEGGLong-term potentiation
PubGeneRAP1A
TreeFamRAP1A
CTD5906 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeRAP1A Related clones (RZPD - Berlin)
PubMed
PubMed62 Pubmed reference(s) in LocusLink

Bibliography

Rap1 signalling: adhering to new models.
Bos JL, de Rooij J, Reedquist KA
Nature reviews. Molecular cell biology. 2001 ; 2 (5) : 369-377.
PMID 11331911
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written05-2001Jean de Gunzburg
Laboratoire de Signalisation Intracellulaire et Oncogenèse INSERM U-528 Institut Curie Section de Recherche 26, rue d'Ulm, 75248 Paris Cedex 05, France

Citation

This paper should be referenced as such :
Gunzburg J de . RAP1A. Atlas Genet Cytogenet Oncol Haematol. May 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/RAP1AID272.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:26:31 2008


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